PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0226100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 332aa    MW: 36196.6 Da    PI: 9.1608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0226100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1591.9e-4961701128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpk.........................kvkaeekewyfFskrd 65 
                        lppGfrFhP+deelvv+yL +k++g   e++  v + +vd++k+ePw+Lp+                         +++ + +ewyfFs +d
  ORGLA04G0226100.1   6 LPPGFRFHPRDEELVVDYLYHKLSGGAGEFFGgVaMVDVDLNKCEPWELPAyflhnliifparararaagrrrradAARVGATEWYFFSLHD 97 
                        79************************9666553349999***********6699**********9999998887664445888********* PP

                NAM  66 kkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +kyatg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  ORGLA04G0226100.1  98 RKYATGQRTNRATRSGYWKATGKDRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 170
                        *****************************977777777776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-492203IPR003441NAC domain
PROSITE profilePS5100551.8976203IPR003441NAC domain
PfamPF023657.3E-267170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMEANLPPGF RFHPRDEELV VDYLYHKLSG GAGEFFGGVA MVDVDLNKCE PWELPAYFLH  60
NLIIFPARAR ARAAGRRRRA DAARVGATEW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK  120
DRAIVTRRRA AAGEAVAGGE VVGMRKTLVF YQGRAPRGSK TEWVMHEFRV DGHAVADHPS  180
SSTSSSSSNL LKEDWVLCRV FYKSRTANPR PVVSGEAAVS LSGELSLPPP PPPPLPVAPA  240
VVDGYTGGGY YEQDSSAGYH HHPHRPPTSA ALPFKDLTDF RDLLSNMVQG GGGGAAAAAA  300
AKSEGFHLGW SEEESSGYVQ QSSMASQAWN PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-41120815173NAC domain-containing protein 19
3swm_B1e-41120815173NAC domain-containing protein 19
3swm_C1e-41120815173NAC domain-containing protein 19
3swm_D1e-41120815173NAC domain-containing protein 19
3swp_A1e-41120815173NAC domain-containing protein 19
3swp_B1e-41120815173NAC domain-containing protein 19
3swp_C1e-41120815173NAC domain-containing protein 19
3swp_D1e-41120815173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0226100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-159NAC domain-containing protein 21/22
TrEMBLI1PPZ20.0I1PPZ2_ORYGL; Uncharacterized protein
STRINGORGLA04G0226100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-59NAC family protein