PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0200100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 193aa    MW: 20611.4 Da    PI: 9.6769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0200100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127193123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C  C + F++   L  H+++H
  ORGLA04G0200100.1 71 YTCAFCRREFRSAQALGGHMNVH 93
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-66897No hitNo description
PROSITE profilePS5015711.0117198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAPTSSTEEV KHLTLHHLLK RQHRLKPAAV VWRWPTSVVP GGGAGRPPVP DEQLAADDVD  60
GLGGTWPPRS YTCAFCRREF RSAQALGGHM NVHRRDRAKM RGHGLHGAAG QQLGAAEAPA  120
AAAAARTEYA VALYPILNSG AGGAAVRIPR GDVLLSAPVA LAAARRGHDH RCIDVGDDEN  180
DKKIDLELRL GWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136693229superman protein
2l1o_A2e-136693229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0200100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880752.11e-137uncharacterized protein LOC112938737
TrEMBLA2XWZ71e-136A2XWZ7_ORYSI; Uncharacterized protein
TrEMBLI1PP821e-136I1PP82_ORYGL; Uncharacterized protein
STRINGORGLA04G0200100.11e-137(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.19e-22zinc-finger protein 10