PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA04G0190600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 378aa MW: 37585.6 Da PI: 8.6719 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 74 | 135 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss ORGLA04G0190600.1 74 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 135 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 70 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 76 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
MDAAHWHQGL GLVKPMEEML MAANAAAGAN PNPAATAPSS VTGGALRGGG GGGAPPVAGG 60 AGAGSTERRA RPQKEKALNC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN 120 VPVGGGSRKN KRSSSSAASA SPASASTANS VVTSASMSMS MASTGGGASK NPKLVHEGAQ 180 DLNLAFPHHG GLQAPGEFPA FPSLESSSVC NPGGPMGTNG RGGGALSAME LLRSTGCYMP 240 LQVPMQMPAE YATPGFALGE FRAPPPPPQS SQSLLGFSLD AHGSVGGPSA AGFGSSAGLQ 300 GVPESTGRLL FPFEDLKPTV SSGTGGGGAS GGGGGVDGGH QFDHGKEQQA GGGGGGPGGH 360 DTPGFWNGMI GGGSGTSW |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA04G0190600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB028129 | 0.0 | AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637008.1 | 0.0 | dof zinc finger protein 1 isoform X1 | ||||
Swissprot | Q9SXG8 | 0.0 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | I1PNY7 | 0.0 | I1PNY7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0190600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-43 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|