PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0184100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 427aa MW: 46283.9 Da PI: 4.4074

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0184100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.7e-07	398	424	3	29
HHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 3 rahnerErrRRdriNsafeeLrellPk 29 ++h + ErrRR+++N+ f L++++P+ ORGLA04G0184100.1 398 KNHVMSERRRREKLNEMFLILKSVVPS 424 5899**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.0E-50	13	196	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.417	395	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.20E-7	398	427	No hit	No description
SuperFamily	SSF47459	1.45E-7	398	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-6	398	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	399	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MEETPLPSGK NFRSQLAAAA RSINWTYAIF WSISTSRPGV LTWKYGFYNG EIKTRKITNS 60 MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG 120 PGQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKSASI KTIVCVPFIM HGVLELGTTD 180 PISEDPALVD RIAASFWDTP PRAAFSSEAG DADIVVFEDL DHGNAAVEAT TTTVPGEPHA 240 VAGGEVAECE PNADNDLEQI TMDDIGELYS LCEELDVVRP LDDDSSSWAV ADPWSSFQLV 300 PTSSPAPDQA PAAEATDVDD VVVAALDVSS IDGSCRPSPS SFVAWKRTAD SDEVQAVPLI 360 SGEPPQKLLK KAVAGAGAWM NNGDSSAAAM TTQGSSIKNH VMSERRRREK LNEMFLILKS 420 VVPSIHK

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MEETPLPSGK NFRSQLAAAA RSINWTYAIF WSISTSRPGV LTWKYGFYNG EIKTRKITNS  60
MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG  120
PGQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKSASI KTIVCVPFIM HGVLELGTTD  180
PISEDPALVD RIAASFWDTP PRAAFSSEAG DADIVVFEDL DHGNAAVEAT TTTVPGEPHA  240
VAGGEVAECE PNADNDLEQI TMDDIGELYS LCEELDVVRP LDDDSSSWAV ADPWSSFQLV  300
PTSSPAPDQA PAAEATDVDD VVVAALDVSS IDGSCRPSPS SFVAWKRTAD SDEVQAVPLI  360
SGEPPQKLLK KAVAGAGAWM NNGDSSAAAM TTQGSSIKNH VMSERRRREK LNEMFLILKS  420
VVPSIHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-21	24	196	23	192	Transcription factor MYC3
4rqw_B	1e-21	24	196	23	192	Transcription factor MYC3
4rs9_A	1e-21	24	196	23	192	Transcription factor MYC3
4yz6_A	1e-21	24	196	23	192	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	408	ERRRRE
2	404	409	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0184100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	OSU39860	0.0	U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880379.1	0.0	anthocyanin regulatory Lc protein isoform X2
Swissprot	P13526	1e-128	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	I1PNS2	0.0	I1PNS2_ORYGL; Uncharacterized protein
STRING	ORGLA04G0184100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	3e-63	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]