PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0183900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 451aa    MW: 49556.1 Da    PI: 4.6896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0183900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13377423354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h + ErrRR+++N+ f  L++llP+      +K++Ka+iL +++ Y+k L
  ORGLA04G0183900.1 377 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 423
                        5899***********************7.....6***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-5120198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.177374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-15377428No hitNo description
SuperFamilySSF474593.66E-17377438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16378435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MASAPPVQEE ALQAGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK  60
TRKISNLEDL TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV  120
CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKSATIQTI VCIPFMSGVL  180
ELGTTDPVSE DPNLVNRIVA YLKELQFPIC LEVPSSTPSP DETEDADTVF DGLIEEDQMV  240
ILQGEDELGD VVVAECETNG ANPETITMET DEFYSLCEEL DLDLGSYQLV PTSARETMAA  300
AAAAANDVDG VAYSHASCFV SWKRANPAEK VVAVPMTAGI ESQKLLKKAV GGGTAWMSNI  360
DGRGSVAITT TPGSSIKSHV MSERRRREKL NEMFLILKSL LPSVRKVDKA SILAETITYL  420
KVLEKRVKEL ESSSREPSRW RPTEIGQGKA P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2151982188Transcription factor MYC3
4rqw_B2e-2151982188Transcription factor MYC3
4rs9_A2e-2151982188Transcription factor MYC3
4yz6_A2e-2151982188Transcription factor MYC3
5t0f_A2e-2151982188Transcription factor MYC3
5t0q_A2e-2151982188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382387ERRRRE
2383388RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0183900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210800.0AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.10.0anthocyanin regulatory R-S protein
SwissprotP135261e-135ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLI1PNS00.0I1PNS0_ORYGL; Uncharacterized protein
STRINGORGLA04G0183900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-72bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]