PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0180800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 311aa MW: 32679.3 Da PI: 7.69 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C ++F ++ L H+r+H ORGLA04G0180800.1 5 TCKLCYRRFGNPRALAGHMRSH 26 6********************9 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00088 | 174 | 196 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H ORGLA04G0180800.1 174 FQCPACKKVFRSYQALGGHRASH 196 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.099 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.67E-7 | 5 | 26 | No hit | No description |
Pfam | PF13912 | 0.0045 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.67E-7 | 169 | 196 | No hit | No description |
Pfam | PF13912 | 1.2E-11 | 173 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 174 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 88 | 238 | 258 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.5E-9 | 238 | 259 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAKNTCKLCY RRFGNPRALA GHMRSHSVAA SRSQISSTSS ASTSVAVGDD DGGGDAKRPI 60 QGYVLREKPK RRVRLAESDF SDRESETEYY SSPPHGKRAN TGSGDVEQVS SVSDATSEED 120 VALSLMMLSR DTWPATPPPP PPYRLRGAGY DDGSDGGDAP PAPAAAAAQK RTRFQCPACK 180 KVFRSYQALG GHRASHMRGG RGGCCAPPPN PPPSPATPLQ PLPECDGGEE EGAKPHPHEC 240 PYCFRVFASG QALGGHKRSQ LCSAAAAAAS GDDLPATIKS NGFIDLNLPA PFDDVELSAV 300 SDPFLSSKPG S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 73 | KPKRRVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0180800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606633 | 0.0 | AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634603.2 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | A0A0D3FYQ2 | 0.0 | A0A0D3FYQ2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PNN9 | 0.0 | I1PNN9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0180800.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART04G21020.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-27 | C2H2-like zinc finger protein |