PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0180700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 565aa    MW: 59007.3 Da    PI: 5.9646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0180700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-05124141219
                        EETTTTEEESSHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                        +C++Cgk F++++++  H
  ORGLA04G0180700.1 124 VCKNCGKEFTSWEHFLEH 141
                        7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5363557IPR007087Zinc finger, C2H2
SMARTSM003550.963557IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.05E-63557No hitNo description
PfamPF139120.00463657IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-6118142No hitNo description
PROSITE profilePS501579.141123150IPR007087Zinc finger, C2H2
SMARTSM00355140123143IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.19E-8276299No hitNo description
PROSITE profilePS5015710.242277304IPR007087Zinc finger, C2H2
SMARTSM003550.13277299IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-9277301IPR007087Zinc finger, C2H2
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
SuperFamilySSF576678.19E-8385412No hitNo description
SMARTSM003553.7390412IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-11390413IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182390412IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MCESSPSLHH GQMQPSPSSP RAPPPTAAQA SGYKHFCRVC NKGFTCGSAL GGHMRAHGVG  60
DGDGLGADDD DDDDDDSLGD EAVRRARGGA DDPWNAGGPS SSGAATHVYE LRTNPNRVTR  120
SRQVCKNCGK EFTSWEHFLE HGKCSSGEDD VDRSLQPWSP SPEADGEEDP APAAGWLKGK  180
RSRRCKGTGV DLSPTPSACA AGEEEDLANC LVLLSSSKVD QAGVTEAEQP SSSSASKEHK  240
RLITFMEPTT YVLDTVMALP PPAPAPQYVS TVPRGMFECK ACKKVFSSHQ ALGGHRASHK  300
KVKGCFAAKL ESNAAEVAEP SHHAEVADRS EDNPAKATSD ARRNVHASMD GDGNAGTSDA  360
AAELSMAIVP IEPPVAALAA APLKKKGKMH ECSVCHRLFT SGQALGGHKR CHWLTSSSAD  420
HTASVPPLAD DLVPLSFRPM LDAPEPALDL SIAANPPLLA SAATVRPKVG GSSFHLDAPP  480
PVYIPSSPAI PSQRNKATAT TGSQNANDAV GLSTAAAEDE ADSTTVKRAR LSDLKDVSMA  540
GETTPWLQVG IGSSSRGGAD DNDKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382388LKKKGKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0180700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0696230.0AK069623.1 Oryza sativa Japonica Group cDNA clone:J023023M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLI1PNN80.0I1PNN8_ORYGL; Uncharacterized protein
STRINGORGLA04G0180700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.17e-21C2H2-like zinc finger protein