PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0175700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 449aa MW: 49284.1 Da PI: 7.5406

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0175700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.2	1.7e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ ORGLA04G0175700.1 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 **************55555*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.2E-9	1	53	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.85E-11	5	45	No hit	No description
CDD	cd00202	5.65E-15	6	40	No hit	No description
PROSITE profile	PS50114	11.345	7	40	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.7E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	2.6E-14	7	41	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR 60 ASKLKPPTLK LKEQKQLKKN PSHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC 120 APYGTADASE MTASAQSHAW ESLVPSKRRS CVTRPKPSQM EKLAKDLNSI MHEEQLLYLS 180 GSSEEDLIYH SATPVDSFEM GYGSMLLRPN SKSLEEESEA SSIPADNKSY ITSESYSGSV 240 SFVYSESKAT SNQNVITEQP KKFLVQTSDN ARRANLHTEN QDTLENANSP LVSLHMEGKD 300 SEETRVKTSA SNRLTKSMNP LKRPHDTHFQ SSVELRGTMR SPKRVSKYGD AMGLKCQASF 360 MPKPGNGKDL ACSDRALNLF MLPPDKLSML VPPQYANNDS DQDLLLDVPL NARHPEAELL 420 CQPSQLSSVA HSSTSEGGNA GGEGRLKQP

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR  60
ASKLKPPTLK LKEQKQLKKN PSHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC  120
APYGTADASE MTASAQSHAW ESLVPSKRRS CVTRPKPSQM EKLAKDLNSI MHEEQLLYLS  180
GSSEEDLIYH SATPVDSFEM GYGSMLLRPN SKSLEEESEA SSIPADNKSY ITSESYSGSV  240
SFVYSESKAT SNQNVITEQP KKFLVQTSDN ARRANLHTEN QDTLENANSP LVSLHMEGKD  300
SEETRVKTSA SNRLTKSMNP LKRPHDTHFQ SSVELRGTMR SPKRVSKYGD AMGLKCQASF  360
MPKPGNGKDL ACSDRALNLF MLPPDKLSML VPPQYANNDS DQDLLLDVPL NARHPEAELL  420
CQPSQLSSVA HSSTSEGGNA GGEGRLKQP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0175700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070729	0.0	AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880746.1	0.0	uncharacterized protein LOC4336558
TrEMBL	I1PNI8	0.0	I1PNI8_ORYGL; Uncharacterized protein
STRING	ORGLA04G0175700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4424	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	3e-56	GATA transcription factor 26