PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0173400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 528aa    MW: 57386.9 Da    PI: 5.8896
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0173400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix108.54.4e-34280364186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+k ev+aLi++r e++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+
  ORGLA04G0173400.1 280 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 364
                        8*********************************************************************8.99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.805273337IPR017877Myb-like domain
SMARTSM007178.3E-6277339IPR001005SANT/Myb domain
PfamPF138374.1E-23279365No hitNo description
Gene3DG3DSA:1.10.10.602.4E-4279336IPR009057Homeodomain-like
CDDcd122037.84E-30280344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MHAFAPPVPA PPPMSAMPPP PGPIQPAPIS SAAPAVPLEL PPQPPINLQG LSFSSMSGSE  60
SDDESEDDEM TAETGGSQDR LGKRKRGAGG KRLATFFEGL IKQVVDRQEE MQRRFLETME  120
KREAERTARE EAWRRQEVAR LNREQEQLAQ ERAAAASRDA AIISFLQRIG GQSVQVPPAA  180
TVIQMPTPVQ LQTPPPVKQP ARQHQPQPTP PPPQAAPIPA APLQQQPPQP QHKETIHHEA  240
VTPRSAPPTS GSSLELVPAA EQHVESGLGG GEGGSASSSR WPKTEVQALI QLRMELDMRY  300
QETGPKGPLW EEISSGMRRL GYNRSSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF  360
HQLDVIYRRK HLTGGGGGGA SAANVAATAI EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ  420
VPTSNGDTAP TTATFDVNSG MKKPEDIVRE LSEQPPREFT TDETDSDDMG DDYTDDGEEG  480
EDDGKMQYRI QFQRPNPGGA NTAPPPATTP ASAVPTSTPT STFLAMVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0173400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071390.0AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637050.10.0trihelix transcription factor GTL1 isoform X2
TrEMBLI1PNG50.0I1PNG5_ORYGL; Uncharacterized protein
STRINGORGLA04G0173400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-49Trihelix family protein