PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0160200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 393aa MW: 42978.7 Da PI: 8.0715 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.6 | 2.8e-24 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ ++++ + + +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+ ORGLA04G0160200.1 126 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM-- 213 89*********************999****987656666..5************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++++ +v+++r+ ORGLA04G0160200.1 214 RDEGGNIHVGLRRA 227 5699*******996 PP | |||||||
2 | Auxin_resp | 119.9 | 2e-39 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+t+++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+ ORGLA04G0160200.1 281 AATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 364 78999*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-37 | 115 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.84E-29 | 121 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-20 | 125 | 226 | No hit | No description |
PROSITE profile | PS50863 | 12.435 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-22 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-21 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.6E-34 | 281 | 364 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MLPFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS 60 ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSSR 120 PRPTSFAKTL TQSDANNGGG FSVPRFCAET IFPELDYSSE PPVQSVCAKD VHGVEWTFRH 180 IYRGTPRRHL LTTGWSPFVN KKQLTAGDSI VFMRDEGGNI HVGLRRAKRG FCSIGGDDES 240 LSSMPGWDQY RGLMRRNATA TATGGRTPPK GKVPPENVLT AATRATTGQP FEVLYYPRAS 300 TPEFCVRAAA VRTAMAVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQAS DPVRWPQSPW 360 RLLQVHIHGT NMRQPQLDHD RVVEFLINWP PRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-78 | 1 | 365 | 33 | 368 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0160200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662958 | 0.0 | AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence. | |||
GenBank | AL731629 | 0.0 | AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633845.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q01I35 | 0.0 | ARFJ_ORYSI; Auxin response factor 10 | ||||
Swissprot | Q7XKK6 | 0.0 | ARFJ_ORYSJ; Auxin response factor 10 | ||||
TrEMBL | I1PN33 | 0.0 | I1PN33_ORYGL; Auxin response factor | ||||
STRING | ORGLA04G0160200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-137 | auxin response factor 16 |