PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0153400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 395aa    MW: 44020.4 Da    PI: 8.4616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0153400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.81.7e-09661824126
                NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        G  F+Pt e++v++yL  + + +   l + ++++d+y ++P  L     +a+e+ ew+fF++r++    g  ++ra   g  + + + k   
  ORGLA04G0153400.1  66 GQPFDPTAEDIVNRYLPLRRALRCDALPRQVHDADVYGAHPALLAsVYPAANERfEWFFFVCRRRCP-GG--RRRA-GPGDYRLSQEAK--- 150
                        667************977766666556567**************83333344457******998854.33..2333.445555444322... PP

                NAM  94 skkgelvglkktLvfykgrapkg..ektdWvmhey 126
                        +   +     +++ +y+ ++  g  ++t+W m ey
  ORGLA04G0153400.1 151 H---RGNAFCHSFRYYEYEDAGGgfRETEWRMVEY 182
                        2...2235667888886655544235899999988 PP
2NAM24.95.6e-0823736013128
                NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgk......rknratksgyWkatgkdkevlskk 96 
                         lv+ yL+    g++l + +v +  d+++++P  + +++ a +++ ew+f + r + +a+g+      r+++ +  g      + + v   +
  ORGLA04G0153400.1 237 VLVQLYLASLRLGNPLAC-RVHRADDVFDAHPAVITAALPAaNDRcEWFFAAVRPRGHAQGHgdgappRPRK-AGPGAYVPVRECRVVDG-R 325
                        58999****999999998.666667*********98533331444699999999999998777777645544.57799998888776666.8 PP

                NAM  97 gelvglkktLvfy...kgrapkgektdWvmheyrl 128
                        + ++g++ ++ +    ++ ++ +++t+W m+eyr+
  ORGLA04G0153400.1 326 RGDMGCRLVFWYReddEEARRASRRTEWWMDEYRF 360
                        889***9999888554344555679********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2358205IPR003441NAC domain
PROSITE profilePS5100516.39263207IPR003441NAC domain
PfamPF023654.1E-767182IPR003441NAC domain
PROSITE profilePS5100513.457225389IPR003441NAC domain
SuperFamilySSF1019416.8E-22236387IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MRPMRPRASQ AAAPETAAAA ESLREEETED GWVFLAGRSR ATRPPPPPPS PMARAVASGG  60
SGGGGGQPFD PTAEDIVNRY LPLRRALRCD ALPRQVHDAD VYGAHPALLA SVYPAANERF  120
EWFFFVCRRR CPGGRRRAGP GDYRLSQEAK HRGNAFCHSF RYYEYEDAGG GFRETEWRMV  180
EYGDRGRDAG AGGSEGFELV VCKVYPARGG ALHERLGADR AVLATRHRAD EDAKPQVLVQ  240
LYLASLRLGN PLACRVHRAD DVFDAHPAVI TAALPAANDR CEWFFAAVRP RGHAQGHGDG  300
APPRPRKAGP GAYVPVRECR VVDGRRGDMG CRLVFWYRED DEEARRASRR TEWWMDEYRF  360
GPDFPYGELP APMARGEDEE LVVYKVYPRL VGNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0153400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629690.0AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8552130.0CR855213.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634867.10.0uncharacterized protein LOC9267434
TrEMBLI1PMW50.0I1PMW5_ORYGL; Uncharacterized protein
STRINGORGLA04G0153400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819