PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0144400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 936aa MW: 101564 Da PI: 5.9695

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0144400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.5e-29	564	615	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR++GI+RWP+Rki+++ ORGLA04G0144400.1 564 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKV 615 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	550	635	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-26	567	615	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.5E-25	825	917	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.0E-23	831	913	No hit	No description
PROSITE profile	PS51745	27.075	834	916	IPR000270	PB1 domain
SMART	SM00666	4.4E-23	834	916	IPR000270	PB1 domain
Pfam	PF00564	7.7E-18	835	915	IPR000270	PB1 domain
CDD	cd06407	1.30E-29	835	915	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence Send to blast
MDMPTPSNRA GCNGNTGGSM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR 60 MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD 120 DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP 180 FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH 240 ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNVCNALQA VNLKATKGSS 300 NQKFYTENQK FAFTEILDVL RAICHAHMLP LALTWVPTSN GIDGGYVVGK DGASFSQSGK 360 TIIRIHESAC YVNDGKMQGF LQACARRHLE KGQGIAGRAL KSNLPFFSPD IREYSIEDYP 420 LAHHARKFSL HAAVAIRLRS TYTGNDDYIL EFFLPVSCKG SGEQQMLLNN LSSTMQRICK 480 SLRTVYEAEV DNVNAGTAAV FRKNNESCLP TGHTESSSHG DQSITGASFE DTSLANKPGV 540 MEPELAEQVQ PSSIGHAEKK RSTAEKNISL DVLRKYFSGS LKDAAKSLGV CPTTLKRICR 600 HHGISRWPSR KINKVNRSLK KIQTVINSVH GVDRSLQYDP ATGSLVPVVS LPEKLTFPSC 660 DGLPTPSVGK TVEENSDLKS EEGCSLPDGS QRQSCQLQIS DVKKSNEDEF HIGSGNSDFY 720 GANATAKSNS EVTQGPLCPT GAFSALHLKG TDCTNPSSSL RPSSESTRNQ IVGRNSPSIQ 780 QEDLDMLDNH EAEDKDHMHP STSGMTDSSS GSASSHPTFK QNTRSALKDA ASPALTVKAT 840 YNGDTVRFKF LPSMGWYQLL EEIAKRFKLP TGAFQLKYKD DEDEWVILAN DSDLQECVDV 900 LDSIGSRIVK LQVRDLPCIV SSSGSSTCLQ LAAHSS

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence Send to blast

MDMPTPSNRA GCNGNTGGSM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR  60
MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD  120
DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP  180
FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH  240
ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNVCNALQA VNLKATKGSS  300
NQKFYTENQK FAFTEILDVL RAICHAHMLP LALTWVPTSN GIDGGYVVGK DGASFSQSGK  360
TIIRIHESAC YVNDGKMQGF LQACARRHLE KGQGIAGRAL KSNLPFFSPD IREYSIEDYP  420
LAHHARKFSL HAAVAIRLRS TYTGNDDYIL EFFLPVSCKG SGEQQMLLNN LSSTMQRICK  480
SLRTVYEAEV DNVNAGTAAV FRKNNESCLP TGHTESSSHG DQSITGASFE DTSLANKPGV  540
MEPELAEQVQ PSSIGHAEKK RSTAEKNISL DVLRKYFSGS LKDAAKSLGV CPTTLKRICR  600
HHGISRWPSR KINKVNRSLK KIQTVINSVH GVDRSLQYDP ATGSLVPVVS LPEKLTFPSC  660
DGLPTPSVGK TVEENSDLKS EEGCSLPDGS QRQSCQLQIS DVKKSNEDEF HIGSGNSDFY  720
GANATAKSNS EVTQGPLCPT GAFSALHLKG TDCTNPSSSL RPSSESTRNQ IVGRNSPSIQ  780
QEDLDMLDNH EAEDKDHMHP STSGMTDSSS GSASSHPTFK QNTRSALKDA ASPALTVKAT  840
YNGDTVRFKF LPSMGWYQLL EEIAKRFKLP TGAFQLKYKD DEDEWVILAN DSDLQECVDV  900
LDSIGSRIVK LQVRDLPCIV SSSGSSTCLQ LAAHSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0144400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103154	0.0	AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636521.1	0.0	protein NLP2
Refseq	XP_015636522.1	0.0	protein NLP2
Refseq	XP_015636523.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	I1PMM5	0.0	I1PMM5_ORYGL; Uncharacterized protein
STRING	ORGLA04G0144400.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]