PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0126900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 704aa    MW: 72309.4 Da    PI: 7.8938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0126900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008189210223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +Cp Cgk+F +   +  H+r+H
  ORGLA04G0126900.1 189 TCPECGKVFMSDKAMYGHLRSH 210
                        8*******************99 PP

2zf-C2H2130.00031463485123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+k+Fs++  L  H   H
  ORGLA04G0126900.1 463 YECSECHKTFSTHQALGGHVAAH 485
                        99***********9998887666 PP

3zf-C2H211.10.0012566588123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C  C+++F++   L  H+r+H
  ORGLA04G0126900.1 566 HQCLRCPMVFPTGQALGGHMRKH 588
                        79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0066188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887188215IPR007087Zinc finger, C2H2
SuperFamilySSF576675.56E-8189210No hitNo description
PfamPF139122.0E-5190210IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576675.56E-8458485No hitNo description
SMARTSM003550.02463485IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.822463490IPR007087Zinc finger, C2H2
PfamPF139122.1E-7463487IPR007087Zinc finger, C2H2
PROSITE patternPS000280465485IPR007087Zinc finger, C2H2
SMARTSM003550.12566588IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-6566588IPR007087Zinc finger, C2H2
PROSITE patternPS000280568588IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MAASGQVRCL LPLRVALSPP LPPWPPTTMV MPPLLAAAAA MAASGQVRRF LSLRAALPSP  60
WPLATMAPSS SCHCHHGCRC PGFQYAFVRE KAAGDHLSLG YMQHGDNNNK KKKGDLSNNL  120
DLSSSPLLMD SRGQACYHRA AAAAAAVAAG DATDGEEPAA AELAPKAVRS KKKLAVEAQG  180
GAAVRDDLTC PECGKVFMSD KAMYGHLRSH PLRKHKGAAR LAAVAAAAAD DASVAAGVKP  240
RPWKVPRTKE EAELGDDRHP GRSPVTGKRG RPASSASSSG SAPAPAPPAS SRLQLVITEE  300
EEAAMTLLDI ASGCSLDHQP TQPAHVADAA LLAPASDQMP SVDVEQGVLA VAEHRTWEAE  360
KPALVEHVFG IVKEHVAAVA ADAEPQSPEA KTPVKLGPVT DQAVPVLGDK NDDGHADMPV  420
SPGGGTTKKP LKRRLQDVET KHPTAPPPPP VKRIPSPASK RKYECSECHK TFSTHQALGG  480
HVAAHKRQKK SCAEQQQEAV AAAAQVARHN FLAHQRPAGV VVAVDATVVA AAGGGIAIGP  540
LGEEGLVGPP PPPAPAPAPA PAPQQHQCLR CPMVFPTGQA LGGHMRKHFL EAKEQEQLLA  600
IAIANANANA NAAPEPPPMM ANAAPVPPPS MANGAGPVPP PIAVAPPPAP PIAGAAPPPP  660
MANGAAAAAP PGGNPAPPAG PQPGVNMFDL NELPNEDAGE NQQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427434KKPLKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0126900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064410.0AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880741.10.0zinc finger protein 628-like
TrEMBLI1PM500.0I1PM50_ORYGL; Uncharacterized protein
STRINGORGLA04G0126900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1819399