PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0108900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 175aa    MW: 17468.4 Da    PI: 8.5164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0108900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143557123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C +C++ F+++  L  H++ H
  ORGLA04G0108900.1 35 FSCCYCPRKFRSSQALGGHQNAH 57
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0763562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEFGMVEDAA AAAGEEGLTL SLSLQPSPPR FQALFSCCYC PRKFRSSQAL GGHQNAHKLQ  60
RNLARRGREA AASLAAAAAA AAAAAASSGD QQQQGRTTAA AAAVLAGGES APPAAARAAA  120
DLDGAGVWGG AGMRGRPAHH HRLMQGGYSS GGSSAAGGRG NGELADEMID LSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0108900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9999980.0GQ999998.1 Oryza sativa Japonica Group C2H2 zinc finger malformed spikelet (MLS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635414.11e-119homeobox even-skipped homolog protein 2
TrEMBLA0A0E0H1C71e-117A0A0E0H1C7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P9P31e-117A0A0E0P9P3_ORYRU; Uncharacterized protein
TrEMBLA2XTW01e-117A2XTW0_ORYSI; Uncharacterized protein
TrEMBLI1PLM01e-117I1PLM0_ORYGL; Uncharacterized protein
TrEMBLQ7XRM11e-117Q7XRM1_ORYSJ; C2H2 zinc finger malformed spikelet
STRINGORUFI04G15140.11e-118(Oryza rufipogon)
STRINGOS04T0444100-001e-118(Oryza sativa)
STRINGONIVA04G12070.11e-118(Oryza nivara)
STRINGORGLA04G0108900.11e-118(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-13zinc finger protein 2