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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ORGLA04G0100500.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 506aa MW: 52710.9 Da PI: 8.2762 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA04G0100500.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 242.6 | 1.6e-74 | 88 | 497 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
lv+lLl+++ a ++gd+++a a+L ++ +as +g dp qR+aa+++ ALa rla +l a ++ +++ +e++ a+++f+++sP+
ORGLA04G0100500.1 88 LVRLLLSAVAAGEAGDARAAAAALREVDRRASCRGggDPAQRVAACYAAALAPRLAA---GLRPARSSPAAPAAARAEQFLAYTMFYQASPF 176
6899**************************99998789******************9...44444444444444589999************ PP
GRAS 91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspesgskeeleet 161
++f+h+taNqaI+ea+e+ +r+H++Dfd+s+G+QWp+L+q+L++ ++ p slRiTg+g+ s++el+et
ORGLA04G0100500.1 177 YQFAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAAAatsssshddddngggcgdgPVSLRITGFGA----SADELRET 264
****************9876699*********************988744455677888888999999788*********....9******* PP
GRAS 162 gerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....ad 247
+ rL++fA+ + +++fef+ + ++ ++ + + r++ + +++Vnlv+ + ++ + + ++sl+P +v ++e+ +
ORGLA04G0100500.1 265 EARLRRFAAGCpNLRFEFEG-ILNNGSNTRHDCTRIDDDATVVVNLVFPASSRE---AC----AATRMAYINSLNPSMVFLIEKHdggggL- 347
*******998769*******.6999***********************655553...22....234699**************97555431. PP
GRAS 248 hnse...........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle..........kWrer 318
+ s+l rf+ l+y++a+fdsl++ lp++s er +Er lgrei ++va ++r rh + +W+++
ORGLA04G0100500.1 348 ---TggdntttgrsaSLLPRFAANLRYFAAVFDSLHECLPADSAERLAIERDHLGREIADAVASLDHQHRRRHGGGGgggdhasaswNWKAA 436
...133455566777*************************************************9999999996533222222233389*** PP
GRAS 319 leeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
+e aG+ v+ls+++++qaklll++ + + g+rv e +g + l W+d +L ++++Wr
ORGLA04G0100500.1 437 MEGAGLDGVKLSSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATVWR 497
***********************9977422455***9998877668**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 506 aa
Download sequence Send
to blast |
MNLTLSLAID GGGGGDAAAA AAAVAKKSKV VGGGAVVVDG VGSSAICGGD RGSRVRDRMV 60
KKAEEFDHEN GMAATSSDGG GGGGGMELVR LLLSAVAAGE AGDARAAAAA LREVDRRASC 120
RGGGDPAQRV AACYAAALAP RLAAGLRPAR SSPAAPAAAR AEQFLAYTMF YQASPFYQFA 180
HFTANQAIVE AFESGGRRRL HVVDFDVSYG FQWPSLIQSL SDAAAAATSS SSHDDDDNGG 240
GCGDGPVSLR ITGFGASADE LRETEARLRR FAAGCPNLRF EFEGILNNGS NTRHDCTRID 300
DDATVVVNLV FPASSREACA ATRMAYINSL NPSMVFLIEK HDGGGGLTGG DNTTTGRSAS 360
LLPRFAANLR YFAAVFDSLH ECLPADSAER LAIERDHLGR EIADAVASLD HQHRRRHGGG 420
GGGGDHASAS WNWKAAMEGA GLDGVKLSSR TVSQAKLLLK MKSGCGGGGF RVVEGDGGMA 480
MSLAWRDMAL ATATVWRRRR RRRRCR
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 496 | 503 | RRRRRRRR |
| 2 | 497 | 503 | RRRRRRR |
| 3 | 498 | 505 | RRRRRRCR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL606458 | 0.0 | AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence. |
| GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
