PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0075400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1006aa    MW: 112321 Da    PI: 6.4515
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0075400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11772.4e-55111272117
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np
  ORGLA04G0075400.1  11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNP 102
                        67779*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                         fqrrc+w+Le ++e+ivlv+y+ev
  ORGLA04G0075400.1 103 CFQRRCFWMLEPAYEHIVLVQYREV 127
                        ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3497133IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038597.5E-4713126IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.6E-16451533IPR014756Immunoglobulin E-set
PfamPF018333.7E-7451532IPR002909IPT domain
Gene3DG3DSA:2.60.40.108.0E-6451541IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.202.9E-14646743IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.39E-14648743IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.106648741IPR020683Ankyrin repeat-containing domain
CDDcd002045.30E-8653741No hitNo description
PfamPF127961.1E-6664743IPR020683Ankyrin repeat-containing domain
SMARTSM002480.044681711IPR002110Ankyrin repeat
PROSITE profilePS5008810.339681714IPR002110Ankyrin repeat
SMARTSM002481800721750IPR002110Ankyrin repeat
SMARTSM0001527802824IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529803832IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.41E-6858908IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95861890IPR000048IQ motif, EF-hand binding site
SMARTSM0001519862882IPR000048IQ motif, EF-hand binding site
PfamPF006120.022863881IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6883905IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64884912IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5885905IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS  180
SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRWVDN SNSTNKSGLN  240
RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSGGS QAKQIRAEGM  300
QNGLGRGIPS SWEDVLQSSS GFPAPSIYQS TPHYPQNSEY QPPGSLYNSD MQQISAAKRF  360
LLETEDSIDS PSYNYVPREE GNNGTNTLSV HDYSLQSSLN PDWKKTAPLT LQSNLYGSEI  420
PSLLLDHGQF ESLSSGENTR LILGQNPRFS IREVSPEWTY CYEITKVIIT GDFLCDPSSS  480
CWAVMFGDSE VPAEIVQAGV LRCHTPLHSS GKLTICVTSG NREICSEVKD FEFRAKSTAS  540
SFLDISPSSR SLKSSEELLL LAKFVRMLLC ENGSHANSNG DPQSVQCPKL KMNDEHWQRL  600
IDELKGGCEN PLNVSDWIME ELLKSKLQQW LSVKLQGYDG IACSLSKHEQ GIIHLISALG  660
YEWALSSILS ADVGINFRDT NGWTALHWAA YFGCREKMVA ALLAAGASAP AVTDPTAQDP  720
VGKTAAFLAS ERGHLGLAAY LSEVSLTSYL ASLTIQESDT SKGSAAAEAE RAVESISQRN  780
AQLHGGTEDE LSLKDSLAAV RNAAQAAARI QNAFRAFSFR KRQQKTARLK DEYGMTQEDI  840
DELAAASRSY YQSLLPNGQF YDKAAVSIQK KFKGWKGRRH FLNMRRNAVK IQAHVRGHQV  900
RKKYKTFVST VSVLEKVILR WRRKGHGLRG FRAEQTAMAE AEEDDKDDDD DDFNDDEAVK  960
VFRRQKVDES VKEAMSRVLS MVDSPEARMQ YRRMLEEFRQ ATVSAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0075400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635911.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLI1PKN50.0I1PKN5_ORYGL; Uncharacterized protein
STRINGORGLA04G0075400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-147Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains