PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0069500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 264aa    MW: 28599.4 Da    PI: 10.3204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0069500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-0876117240
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                        ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  ORGLA04G0069500.1  76 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 117
                        68************************************9876 PP
2Myb_DNA-binding24.46.7e-08207250344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                        +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck ++
  ORGLA04G0069500.1 207 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTMVQCKKKF 250
                        7********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-571117IPR009057Homeodomain-like
PROSITE profilePS512937.21973128IPR017884SANT domain
SMARTSM007171.4E-574127IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-776119IPR009057Homeodomain-like
PfamPF002491.0E-676117IPR001005SANT/Myb domain
CDDcd001671.56E-577117No hitNo description
PROSITE profilePS512938.965203258IPR017884SANT domain
SMARTSM007172.2E-7204256IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-9205256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-5207254IPR009057Homeodomain-like
CDDcd001672.06E-6207250No hitNo description
PfamPF002499.0E-7207250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MERLKKLCDS MENKDTTEKA RLLRGALSKE DSSGTSNEGK KIQANGVDGS KAKSTSSGEK  60
VTQGNTLSNY EKKEEKPWGR EEIELLRKAI QKYPKGTSRR WEVVSEFIGT GRSVEEILKA  120
TKTVLLQKPD STKAFDSFLE KRKPAPSIAS PLSVRTETVG LPTEKASGDA SSKAPAQPAS  180
SKTSDEKAPA PAPVSNGTPS GTADPEAWSE AQVLALVQAL KAFPKDASQR WERVAAAVPG  240
KTMVQCKKKF AEMQKNFRSK KGAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0069500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633497.11e-176dnaJ homolog subfamily C member 2
TrEMBLI1P6D60.0I1P6D6_ORYGL; Uncharacterized protein
STRINGORGLA02G0354200.10.0(Oryza glaberrima)
STRINGORGLA04G0069500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.17e-67DnaJ domain ;Myb-like DNA-binding domain