PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0036000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 54aa MW: 6057.03 Da PI: 8.9499

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0036000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.8e-09	14	45	1	31
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartm 31 +g+W++eEd +l++ ++++G+g +W + ++++ ORGLA04G0036000.1 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKL 45 79***********************8888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-12	5	44	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.869	9	54	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-8	11	54	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-8	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	5.96E-5	16	38	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKLVSFLL CRTN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.
UniProt	Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269\|PubMed:26124109, ECO:0000269\|PubMed:26371322}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0036000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269\|PubMed:24517883, ECO:0000269\|PubMed:26371322}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096205	4e-41	FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446179.1	6e-26	transcription factor RAX2
Swissprot	Q9FKL2	6e-23	MYB36_ARATH; Transcription factor MYB36
Swissprot	Q9SJL7	5e-23	RAX2_ARATH; Transcription factor RAX2
TrEMBL	I1PJJ1	1e-32	I1PJJ1_ORYGL; Uncharacterized protein
STRING	ORGLA04G0036000.1	2e-33	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	2e-25	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Fernández-Marcos M, et al. Control of Arabidopsis lateral root primordium boundaries by MYB36. New Phytol., 2017. 213(1): p. 105-112 [PMID:27891649]