PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0016600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 365aa    MW: 38499.3 Da    PI: 7.7318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0016600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07197219123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  ORGLA04G0016600.1 197 HYCQVCGKGFKRDANLRMHMRAH 219
                        68*******************99 PP
2zf-C2H212.90.00033283306123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C+ Cg k F   s+L++H + +
  ORGLA04G0016600.1 283 YVCGRCGgKQFAVLSDLRTHEKHC 306
                        9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180174186IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF576674.68E-6196223No hitNo description
SMARTSM003550.0034197219IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-6197221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM00355110245278IPR015880Zinc finger, C2H2-like
SMARTSM0035530283305IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAPA PAAASDDVLA YHVGVLRDKV QQLEPLVGMV  60
VSPAAPHGHL RRDAAAMAAS SACSVLQEIT AAASAVAHRL EQASAASAAA SFRRGVAFAD  120
DAHAGGEQMF AAGAHGGGEG GGDEADASLF HHQPTVFRAG ATTTVAASSS GGGDDDGDGE  180
VDVVELEASY LLARYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTAAALA STAMKAALAA  240
KRCWYSCPAE GCRWNRRHPR FQALKSVVCA KNHYRRSHCP KMYVCGRCGG KQFAVLSDLR  300
THEKHCGELR WLCSCGTFFS RKDKLMGHVA LFAAGHAPVP VAPEASPSTT TTGTTTDRSR  360
TGLID
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0016600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432850.0AK243285.1 Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence.
GenBankAL6629590.0AL662959.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLI1PIZ70.0I1PIZ7_ORYGL; Uncharacterized protein
STRINGORGLA04G0016600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-70C2H2 family protein