PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0006300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 266aa    MW: 27617 Da    PI: 11.4972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0006300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05241263223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         C+ Cg++F+  ++L++H+   H
  ORGLA04G0006300.1 241 ACSQCGEVFTKADSLEHHQAIrH 263
                        6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280240263IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492240266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MALSTLLLPS SSSSSKTATA TDTSDRRRHH HHHNHTKRKK KPPPPSLSPM PRTPPPAGSG  60
SHRAMAPSSK KSTKQVVVAA KTTTGHRPKK AAAPTMPSRG GAPSASAAPV SSSWEQLKSL  120
LSCRSATAAA RVHDPAAPSS ALSRLRSHGA GACGASLCAI RDVVDAASSA SAASTAAASL  180
DRDTTPLTRS SRRAHRAATS SSGGGGGHHA SLRGLSGCYE CRAINVEPMS RRYPRPRELC  240
ACSQCGEVFT KADSLEHHQA IRHTVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12540RRRHHHHHNHTKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0006300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2267710.0EU226771.1 Oryza sativa Indica Group isolate A11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634299.11e-103uncharacterized protein LOC4334944
TrEMBLI1PIP40.0I1PIP4_ORYGL; Uncharacterized protein
STRINGORGLA04G0006300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-11C2H2-like zinc finger protein