PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0006000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 493aa    MW: 53632.1 Da    PI: 4.7385
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0006000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.63.2e-26193258171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++lle +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn irwkg
  ORGLA04G0006000.1 193 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 258
                        6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-28190259IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-16193256IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-34193258IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-23195258IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF164211.5E-23299401IPR032198E2F transcription factor, CC-MB domain
CDDcd146602.15E-31299404No hitNo description
SuperFamilySSF1440746.54E-21299403No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDGSAAIPPA PAPTPPAPAP XXXXXFLRRS VLPPPPAPHR APPPPGAHVH YFRAASPIPI  60
FRAAASSRPP RPPPPSTTAA AAPPPAAPAV TPARPPPQQP AVAVAPPPAT TTATATEEVA  120
APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKES TTGTVKGIKR PRKPKGFKKG  180
DAGPSLFSPS NCRYDSSLGL LTKKFINLLE GAEDGTLDLN KAAETLEVQK RRIYDITNVL  240
EGVDLIEKTL KNMIRWKGFD MSKPKERERQ ISALKLLELN LITMTVMVPL YVSSKETMEE  300
IESLYDEESR LDDEIMEAQE KLNALRVDED RRKLYVSKED INAIPRFQGS TLIAVNAPRG  360
TYIEVPDPNL DMDIYKDLDN QEKHYQIVFR SAMGPVDCFL ISNHQETFNT DQQMADNLDA  420
AVTSGSSQAP QQMDYVQASE IGESNGVREH TSEPSKRDDP VPGIVKIVPS DDIAADYWLS  480
SDADVSMTDT WGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-20193258773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0006000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8549941e-171CR854994.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0127D24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633977.10.0transcription factor E2FC
TrEMBLI1PIP10.0I1PIP1_ORYGL; Uncharacterized protein
STRINGORGLA04G0006000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-73E2F transcription factor 1