PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0408400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 578aa MW: 62456.8 Da PI: 4.4252 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.7e-13 | 21 | 62 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE +ll++a + +Gg+ W+ Ia+++ ++t qc +++++ ORGLA03G0408400.1 21 SWTDEETLLLLEALEIFGGK-WTEIAEHVA-TKTKAQCMLHFLQ 62 7*******************.*********.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 21.47 | 17 | 68 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 2.77E-13 | 18 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-13 | 18 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 20 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-12 | 21 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00244 | 39 | 63 | No hit | No description |
Pfam | PF16495 | 1.2E-20 | 464 | 541 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MAKTDFILMD SSEVSGASGT SWTDEETLLL LEALEIFGGK WTEIAEHVAT KTKAQCMLHF 60 LQMQIEDRFH GDEDINQNIQ ENTEQASAEK GAAEIPDKME VEEKAEGKDT AGEKTPEKAE 120 GNSVEAQTED GNAIENKDAN NSGGTDSVKS LNTDEPKKSS DADPPKSSSD AEPVVKENSV 180 DVDTSRENAS NFAIDTLKSA FEAVGYFPEH EGSFADAGNP VMALASFLAG LVEDDTATNS 240 CRSSLKAISE VSPALQLATR HCFILEDPPS DVKDMSGNAS TTSTDGDKRK DKDKTQDSID 300 SEVEGINKKG ETVLSVEGKK SYPISPKGQD TDKKDECDED PSVDPKHNNG KESDDPVSLD 360 KSVSNNKKGN TMETSNPEMI EDKASSEVNP ADDSSLEGKV EMKKTKDAVA NATTAQEQKQ 420 SQILENGKME EPKSTEDVAA DEENSSRVTA NLTDSITRLK RAAATAISAA AVKAKLLADH 480 EEEQIRQLAA LMIDKLYRKV EAKVSFLTEV EHLVQRTREY TEKTRKKLLM ERNAIIAARM 540 GSLPSRPNQP GAAGNRLPAG YGGPIVRPPP NAMPRPSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0408400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058989 | 0.0 | AK058989.1 Oryza sativa Japonica Group cDNA clone:001-020-F03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632283.1 | 0.0 | SWI/SNF complex subunit SWI3D isoform X2 | ||||
TrEMBL | I1PI88 | 0.0 | I1PI88_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0408400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4542 | 12 | 14 |