PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0402100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 194aa MW: 20346.9 Da PI: 10.4486 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.8 | 5.2e-13 | 21 | 65 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky ORGLA03G0402100.1 21 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 65 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.605 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-17 | 16 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 18 | 68 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-17 | 18 | 68 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.8E-11 | 21 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.30E-11 | 21 | 66 | No hit | No description |
Pfam | PF00249 | 1.7E-11 | 21 | 65 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
GGHGEKGSAK SAEQERRKGI AWTEDEHRLF LLGLEKYGKG DWRSISRNFV ISRTPTQVAS 60 HAQKYFIRLN SMNRERRRSS IHDITSVNNG DTSAAQGPIT GQPNGPSANP GKSSKQSPQP 120 ANAPPGVDAY GTTIGQPVGG PLVSAVGTPV TLPVPAAPHI AYGMHAPVPG AVVPGAPVNM 180 PPMPYPMPPP TSHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0402100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068623 | 0.0 | AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence. | |||
GenBank | AK106166 | 0.0 | AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636999.1 | 1e-138 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 4e-75 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | B8ARG2 | 1e-138 | B8ARG2_ORYSI; Uncharacterized protein | ||||
STRING | OBART04G29570.1 | 1e-139 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-64 | MYB family protein |
Publications ? help Back to Top | |||
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