PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA03G0383200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 506aa MW: 55295.2 Da PI: 4.7268 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.8 | 2.3e-35 | 38 | 129 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+ye+++d++++ ++sw +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+l ORGLA03G0383200.1 38 FLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHL 120 9*********************99*****************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i+r+k ORGLA03G0383200.1 121 LKTINRRKP 129 *******86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 9.39E-36 | 33 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-61 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.0E-38 | 35 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.6E-31 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MEAAVAAAAA AAGAVTTAVA PPPGAAVSNG VATAPPPFLM KTYEMVDDPA TDAVVSWGPG 60 NNSFVVWNTP EFARDLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LKTINRRKPT HGNNQVQQPQ LPAAPVPACV EVGKFGMEEE IEMLKRDKNV LMQELVRLRQ 180 QQQTTDHQLQ TLGKRLQGME QRQQQMMSFL AKAMHSPGFL AQFVQQNENS RRRIVASNKK 240 RRLPKQDGSL DSESASLDGQ IVKYQPMINE AAKAMLRKIL KLDSSHRFES MGNSDNFLLE 300 NYMPNGQGFD SSSSTRNSGV TLAEVPANSG LPYVATSSGL SAICSTSTPQ IQCPVVLDNG 360 IPKEVPNMSA VPSVPKAVAP GPTDINIPEF PDLQDIVAEE NVDIPGGGFE MPGPEGVFSL 420 PEEGDDSVPI ETDEILYNDD TQKLPAIIDS FWEQFLVASP LSVDNDEVDS GVLDQKETQQ 480 GNGWTKAENM ANLTEQMGLL SSHHTG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-27 | 8 | 127 | 1 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-27 | 8 | 127 | 1 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-27 | 8 | 127 | 1 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA03G0383200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK100430 | 0.0 | AK100430.1 Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence. | |||
GenBank | AK106118 | 0.0 | AK106118.1 Oryza sativa Japonica Group cDNA clone:001-207-E07, full insert sequence. | |||
GenBank | AY344485 | 0.0 | AY344485.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA, complete cds. | |||
GenBank | EU846983 | 0.0 | EU846983.1 Oryza sativa Japonica Group clone KCS225D11 heat shock factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630421.1 | 0.0 | heat stress transcription factor A-1 | ||||
Swissprot | Q84T61 | 0.0 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A0D3FRI7 | 0.0 | A0A0D3FRI7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GWQ4 | 0.0 | A0A0E0GWQ4_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1PHI6 | 0.0 | I1PHI6_ORYGL; Uncharacterized protein | ||||
STRING | ONIVA03G43540.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA03G0383200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G41440.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5097 | 31 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-123 | heat shock factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|