PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0381000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 302aa    MW: 32711.3 Da    PI: 11.1438
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0381000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC383.5e-121942831099
              NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                         e ++d    ++P+ar+++i++a++   + s ea  l+ ka e+f+  ++  ++ +a + +++++   ++++av + + ++fl d vp++
  ORGLA03G0381000.1 194 AEAVADHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFLKRFADVAYRNALKDRKKSIVYDNLSTAVCNQKRYKFLSDFVPQK 283
                        56777888889****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.38E-19182283IPR009072Histone-fold
PfamPF008082.0E-12204267IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.6E-20205282IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGKKKALTN PASPSASASA STPKKSTATS KDRSTPKPRK NPNPKEEAPP PPPANNKRLN  60
PQGGSNRKKK ADAGTPSKKP KRQPPEPKPR KHKGAKSEKP HRVSGEGEKP TPTKKKKKES  120
SKEPKREKQQ ASAPMSTPSK KNKEAKRDTG GAGKPTPTKR KLGDVDPPQE RPSGEGQASS  180
PTPAKKRKDK AAAAEAVADH GAGSFPMARV RQIMRAEDAT IRPSNEAVFL INKATEIFLK  240
RFADVAYRNA LKDRKKSIVY DNLSTAVCNQ KRYKFLSDFV PQKVTAEDAL KAPVSSQVNQ  300
PQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17790KKPKRQPPEPKPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0381000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036070.0AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628750.11e-162nuclear pore complex-interacting protein family member B13
RefseqXP_015628751.11e-162nuclear pore complex-interacting protein family member B13
TrEMBLA0A0D3FRG40.0A0A0D3FRG4_9ORYZ; Uncharacterized protein
TrEMBLI1PHG40.0I1PHG4_ORYGL; Uncharacterized protein
STRINGORGLA03G0381000.10.0(Oryza glaberrima)
STRINGOBART03G41240.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-26nuclear factor Y, subunit C10