PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0372600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 313aa MW: 33969.6 Da PI: 4.6144

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0372600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	67.8	3.1e-21	8	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat..gkrknratksgy.. 82 l pG+ F+P+d+ lv+ +L++k+++ ++e + i+++d+y+++P +L ++++++ wyfF++ + ++++ + r++ra+ g ORGLA03G0372600.1 8 LEPGYAFRPSDDGLVTLFLRPKIAKIPFEH-RLINHADVYSTDPTELVGehrpapGTHGSSRVWYFFCSPRYTSKRkaSGRRQRAVGGGCen 98 579**********************999.89**********733567665556778**987666541155777777755445 PP NAM 83 .WkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 Wk+ g +k+v+ ++g+ vg + + + +g+a++ ++ W+m ey l ORGLA03G0372600.1 99 vWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARSFTRLGWCMTEYGL 151 5****************999999666777779999999*******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-33	6	170	IPR003441	NAC domain
PROSITE profile	PS51005	29.571	8	170	IPR003441	NAC domain
Pfam	PF02365	3.2E-13	10	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDDDEIALEP GYAFRPSDDG LVTLFLRPKI AKIPFEHRLI NHADVYSTDP TELVGEHRPA 60 PGTHGSSRVW YFFCSPRYTS KRKASGRRQR AVGGGCENVW KSEGGKKAVI GADGRRVGYL 120 QKFSYGVYES SSSGSARSFT RLGWCMTEYG LDDDAIDGAD KQVLCKVYRS PRAVCAEART 180 AAAKCSGSKR KADDGADHPE APPSARPRQE EAGSEHDEQP ELPPELDLDA LLSAPMDENL 240 ESTFSTAATE QYMRYLMNDE PLPWAPTMDP VDGGAGGGDE FIQTANGPCM DGEVFARLAA 300 GETLDDILGS TSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-12	5	169	14	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-12	5	169	14	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-12	5	169	14	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-12	5	169	14	164	NO APICAL MERISTEM PROTEIN
3swm_A	1e-12	5	169	17	167	NAC domain-containing protein 19
3swm_B	1e-12	5	169	17	167	NAC domain-containing protein 19
3swm_C	1e-12	5	169	17	167	NAC domain-containing protein 19
3swm_D	1e-12	5	169	17	167	NAC domain-containing protein 19
3swp_A	1e-12	5	169	17	167	NAC domain-containing protein 19
3swp_B	1e-12	5	169	17	167	NAC domain-containing protein 19
3swp_C	1e-12	5	169	17	167	NAC domain-containing protein 19
3swp_D	1e-12	5	169	17	167	NAC domain-containing protein 19
4dul_A	1e-12	5	169	14	164	NAC domain-containing protein 19
4dul_B	1e-12	5	169	14	164	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0372600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629679.1	0.0	NAC transcription factor NAM-2
TrEMBL	I1PH80	0.0	I1PH80_ORYGL; Uncharacterized protein
STRING	ORGLA03G0372600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	4e-15	NAC family protein