PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0364100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 319aa    MW: 34217.8 Da    PI: 4.4103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0364100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.5e-2091541128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk..... 79 
                        l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++ra+      
  ORGLA03G0364100.1   9 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVGggggg 99 
                        579************************998.88**************7335666655557779*****987554411556777765444444 PP

                NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                        +++Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  ORGLA03G0364100.1 100 ESVWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 154
                        778********************99999966677766889999999*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-337173IPR003441NAC domain
PROSITE profilePS5100529.1939173IPR003441NAC domain
PfamPF023653.9E-1211153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAD PAELVGEHRP  60
APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RAVGGGGGGE SVWKSEGGKK AVIGADGRRV  120
GYLQKFSYGV YESSSSGSAR TFTRLGWCMT EYGLDDDAID GADKQVLCKV YRSPRAVCAE  180
ARTAAAAKSA DSPCSGSKRK ADDGADHPEA PPSARPRQEE AGSEHGEQPA ILPELDLDAL  240
LSAPMDDSLG VEFDTATTEQ YMRYLMNDEP LPSAPTMEVA GGGDEFIETT NGPCMGEEEI  300
IQRLAAGETL DDILGTNPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-13617314165NO APICAL MERISTEM PROTEIN
1ut4_B5e-13617314165NO APICAL MERISTEM PROTEIN
1ut7_A5e-13617314165NO APICAL MERISTEM PROTEIN
1ut7_B5e-13617314165NO APICAL MERISTEM PROTEIN
3swm_A5e-13617317168NAC domain-containing protein 19
3swm_B5e-13617317168NAC domain-containing protein 19
3swm_C5e-13617317168NAC domain-containing protein 19
3swm_D5e-13617317168NAC domain-containing protein 19
3swp_A5e-13617317168NAC domain-containing protein 19
3swp_B5e-13617317168NAC domain-containing protein 19
3swp_C5e-13617317168NAC domain-containing protein 19
3swp_D5e-13617317168NAC domain-containing protein 19
4dul_A5e-13617314165NAC domain-containing protein 19
4dul_B5e-13617314165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0364100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.10.0NAC domain-containing protein 71-like
RefseqXP_015629670.10.0NAC domain-containing protein 71-like
TrEMBLI1PGZ50.0I1PGZ5_ORYGL; Uncharacterized protein
STRINGORGLA03G0364100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.27e-10NAC family protein