PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0358200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 144aa MW: 15016.2 Da PI: 10.3245

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0358200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H ORGLA03G0358200.1 45 FVCKTCSRAFPSFQALGGHRTSH 67 89**********99998888777 PP
2	zf-C2H2	14.6	9.6e-05	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H ORGLA03G0358200.1 100 HECHICGQGFEMGQALGGHMRRH 122 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.681	45	72	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.51	45	67	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	6.1E-11	45	69	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.47E-7	45	67	No hit	No description
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.47E-7	95	122	No hit	No description
Pfam	PF13912	7.2E-11	99	125	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.512	100	127	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	100	122	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MTKHPRDGEV ISLSLSLMLG AAADSGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL 60 GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAATH ECHICGQGFE MGQALGGHMR 120 RHREEAAAAA AAVHAPPVLL ELFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0358200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104433	0.0	AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBank	AK119690	0.0	AK119690.1 Oryza sativa Japonica Group cDNA clone:002-157-B05, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	AY286473	0.0	AY286473.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP15 mRNA, complete cds.
GenBank	AY305864	0.0	AY305864.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP37 (ZFP37) mRNA, complete cds.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT833140	0.0	CT833140.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212G11, full insert sequence.
GenBank	EU280899	0.0	EU280899.1 Oryza sativa Indica Group zinc finger protein (MM874) gene, complete cds; mitochondrial.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629272.1	3e-98	zinc finger protein ZAT12
TrEMBL	I1PGT6	8e-98	I1PGT6_ORYGL; Uncharacterized protein
STRING	ORGLA03G0358200.1	1e-98	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1305	30	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-15	C2H2 family protein