PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0335700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 356aa    MW: 36170.9 Da    PI: 8.6888
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0335700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22e-36491621105
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssss 81 
                        a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++               a ++ + +++s+
  ORGLA03G0335700.1  49 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaA---AADAAPTRRRSQ 137
                        5899*************************************************************888886553221...222244455555 PP

                TCP  82 asnsssgkaaksaa.kskksqksaa 105
                        +++ s+++ ++s+  +sk s+k+ +
  ORGLA03G0335700.1 138 QQQLSNKSGCSSTSeTSKGSDKEVT 162
                        5544444444444423333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.7E-3551154IPR005333Transcription factor, TCP
PROSITE profilePS5136932.60752110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY  60
TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA  120
IPHAAAADAA PTRRRSQQQQ LSNKSGCSST SETSKGSDKE VTVASAPAQA ASFTELLIAG  180
VAASSAGGGA IGNGADCVGI AHPGKGGAEG ASTYGFSAAS SFGDAPPIGM VPAPPFNFSA  240
PGADMAAHYS LAQDQLAAPP PPAGGDYNLN FSMSSGFLGA NRGTLQSNSP SNMSGHHHHH  300
HQQQLQRLDG STISFLLGHA AAAAHPAASE GQITSTAALQ LWDGFRHSGM KEKSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2657111155Putative transcription factor PCF6
5zkt_B8e-2657111155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0335700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.10.0transcription factor PCF6
SwissprotQ10CE80.0PCF6_ORYSJ; Transcription factor PCF6
TrEMBLI1PG610.0I1PG61_ORYGL; Uncharacterized protein
STRINGORGLA03G0335700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-34TCP family protein