PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0327300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 383aa MW: 41318.5 Da PI: 6.9312 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.4 | 4.2e-07 | 298 | 327 | 26 | 55 |
-HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 26 saeereeLAkklgLterqVkvWFqNrRake 55 ++ e+ LA+ +gL+++q+++WF N+R ++ ORGLA03G0327300.1 298 QEMEKMTLAQTTGLDQKQISNWFINQRKRH 327 5668889********************885 PP | |||||||
2 | ELK | 26.8 | 1.2e-09 | 208 | 229 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LKhqLl KY+g+Lg+L+q Fs ORGLA03G0327300.1 208 QLKHQLLMKYGGSLGDLRQAFS 229 59*****************776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.3E-19 | 79 | 123 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.0E-18 | 80 | 119 | IPR005540 | KNOX1 |
Pfam | PF03789 | 3.8E-9 | 208 | 229 | IPR005539 | ELK domain |
SMART | SM01188 | 4.7E-5 | 208 | 229 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.097 | 208 | 228 | IPR005539 | ELK domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 233 | 260 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.002 | 271 | 334 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.122 | 296 | 330 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.1E-9 | 296 | 336 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.9E-10 | 299 | 326 | IPR008422 | Homeobox KN domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 299 | 330 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.07E-8 | 301 | 330 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 305 | 328 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG 60 GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ YSALFAAYLG CKKVGAPPDV LTKLTAVPAA 120 QQQLDAADGH PRRRHEPRRD DDVPDHQLDQ FMHADEVQGG AGAADPGSRG VLQHGGDADS 180 NCEGTGSSEE EQDTSCPEAE EIDPSDKQLK HQLLMKYGGS LGDLRQAFSK RTKKGKLPKE 240 ARLKLLHWWE LHYDKWPYPS VRTHIYASHL INSTTFFCTK LDLMKMRELL GCTCVYEQEM 300 EKMTLAQTTG LDQKQISNWF INQRKRHWKP TPVAGMTFPT VEAAGGGFRH SGHDGGLAAA 360 AAALPLYMGS WPFVVDGMYR LGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0327300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092781 | 0.0 | AC092781.6 Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879690.1 | 0.0 | homeobox protein knotted-1-like 9 | ||||
Swissprot | Q10EC6 | 0.0 | KNOS9_ORYSJ; Homeobox protein knotted-1-like 9 | ||||
TrEMBL | I1PFX7 | 0.0 | I1PFX7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0327300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14756 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-43 | KNOTTED-like from Arabidopsis thaliana |