PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0327300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 383aa    MW: 41318.5 Da    PI: 6.9312
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0327300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.44.2e-072983272655
                        -HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  26 saeereeLAkklgLterqVkvWFqNrRake 55 
                        ++ e+  LA+ +gL+++q+++WF N+R ++
  ORGLA03G0327300.1 298 QEMEKMTLAQTTGLDQKQISNWFINQRKRH 327
                        5668889********************885 PP

2ELK26.81.2e-09208229122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        +LKhqLl KY+g+Lg+L+q Fs
  ORGLA03G0327300.1 208 QLKHQLLMKYGGSLGDLRQAFS 229
                        59*****************776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-1979123IPR005540KNOX1
PfamPF037902.0E-1880119IPR005540KNOX1
PfamPF037893.8E-9208229IPR005539ELK domain
SMARTSM011884.7E-5208229IPR005539ELK domain
PROSITE profilePS512139.097208228IPR005539ELK domain
Gene3DG3DSA:1.10.10.601.6E-21233260IPR009057Homeodomain-like
SMARTSM003890.002271334IPR001356Homeobox domain
PROSITE profilePS5007110.122296330IPR001356Homeobox domain
SuperFamilySSF466892.1E-9296336IPR009057Homeodomain-like
PfamPF059205.9E-10299326IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.601.6E-21299330IPR009057Homeodomain-like
CDDcd000868.07E-8301330No hitNo description
PROSITE patternPS000270305328IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG  60
GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ YSALFAAYLG CKKVGAPPDV LTKLTAVPAA  120
QQQLDAADGH PRRRHEPRRD DDVPDHQLDQ FMHADEVQGG AGAADPGSRG VLQHGGDADS  180
NCEGTGSSEE EQDTSCPEAE EIDPSDKQLK HQLLMKYGGS LGDLRQAFSK RTKKGKLPKE  240
ARLKLLHWWE LHYDKWPYPS VRTHIYASHL INSTTFFCTK LDLMKMRELL GCTCVYEQEM  300
EKMTLAQTTG LDQKQISNWF INQRKRHWKP TPVAGMTFPT VEAAGGGFRH SGHDGGLAAA  360
AAALPLYMGS WPFVVDGMYR LGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0327300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927810.0AC092781.6 Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879690.10.0homeobox protein knotted-1-like 9
SwissprotQ10EC60.0KNOS9_ORYSJ; Homeobox protein knotted-1-like 9
TrEMBLI1PFX70.0I1PFX7_ORYGL; Uncharacterized protein
STRINGORGLA03G0327300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-43KNOTTED-like from Arabidopsis thaliana