PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0308600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 375aa    MW: 40790.5 Da    PI: 4.7183
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0308600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.8e-34541442101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+ye+++d+ ++++isw   gnsfvv+d + fa  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkkel
  ORGLA03G0308600.1  54 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKEL 136
                        9****************************************************************999.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l++ikr++
  ORGLA03G0308600.1 137 LKTIKRRR 144
                        ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.3E-3450143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5850143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.7E-3750143IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3054143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNPLRVIVKE EELDFAAAAA AAAAGEGSPS SWAVGVMDLP RPMEGLGEAG PPPFLCKTYE  60
VVDDPGTDTV ISWGFAGNSF VVWDANAFAA VLLPRYFKHS NFSSFVRQLN TYGFRKVDPD  120
RWEFANEGFL RGKKELLKTI KRRRPPPSSP PSSSSSSSSS QHQQQPAAAC LEVGQFGRDG  180
VVNRLQRDKS VLIAEVVKLR QEQQTTRAQM QAMEERISAA EQKQQQMTVF LARAMKNPGF  240
LQMLVDRQAG QHGARNRVLE DALSKKRRRP IEYLLTRNGE TCAAGESAAM LAADGVAEPD  300
GDTTPRGDGG GGGGDTESFW MQLLSLGLEE KQREDGVAGG VQESNSGGAD VDNDEEDDDD  360
DVDVLVQSIY HLSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-283514310129Heat shock factor protein 1
5d5v_B7e-283514310129Heat shock factor protein 1
5d5v_D7e-283514310129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0308600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3324650.0AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds.
GenBankAY3444860.0AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds.
GenBankAY9981180.0AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628945.10.0heat stress transcription factor A-2a
SwissprotQ84MN70.0HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLI1PFE00.0I1PFE0_ORYGL; Uncharacterized protein
STRINGORGLA03G0308600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-91heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]