PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0301600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 272aa    MW: 29112.8 Da    PI: 6.5108
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0301600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15167203135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  ORGLA03G0301600.1 167 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 203
                        **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.4E-73369IPR010399Tify domain
PROSITE profilePS5132013.3583368IPR010399Tify domain
PfamPF062004.6E-103567IPR010399Tify domain
PROSITE profilePS5101713.49396138IPR010402CCT domain
PfamPF062035.6E-1696136IPR010402CCT domain
SMARTSM004013.4E-10161215IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-10165215No hitNo description
Gene3DG3DSA:3.30.50.107.1E-14166205IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.89E-13167213No hitNo description
PROSITE patternPS003440167194IPR000679Zinc finger, GATA-type
PfamPF003203.8E-13167203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAAEPPADGR DPPADDGAAG DGAVESAAAE ALLSAASEQL TLVYQGEVYV FDPVPPQKVV  60
QAVLLVLGGS DMPPGLVSMA VPTTFDEKST TVAARRVASL MRFREKRKER CFDKKIRYSV  120
RKEVAQKMKR RKGQFAGRAD FGDGSCSSAP CGSTANGEDD HIRESHCQNC GISSRLTPAM  180
RRGPAGPRSL CNACGLMWAN KGTLRSPLNA PKMTVQHPAD LSKTGDTDDS KANLCAEHNQ  240
TTMKTDTEMV PEQEQKADVL PPTKEEDSMA TS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0301600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.11e-177GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-178GAT19_ORYSJ; GATA transcription factor 19
TrEMBLI1PF700.0I1PF70_ORYGL; Uncharacterized protein
STRINGORGLA03G0301600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-53ZIM-LIKE 2