PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0301600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 272aa MW: 29112.8 Da PI: 6.5108 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.7 | 2.1e-15 | 167 | 203 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ ORGLA03G0301600.1 167 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 203 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 9.4E-7 | 33 | 69 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.358 | 33 | 68 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.6E-10 | 35 | 67 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.493 | 96 | 138 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.6E-16 | 96 | 136 | IPR010402 | CCT domain |
SMART | SM00401 | 3.4E-10 | 161 | 215 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.95E-10 | 165 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.1E-14 | 166 | 205 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.89E-13 | 167 | 213 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 167 | 194 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.8E-13 | 167 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAAEPPADGR DPPADDGAAG DGAVESAAAE ALLSAASEQL TLVYQGEVYV FDPVPPQKVV 60 QAVLLVLGGS DMPPGLVSMA VPTTFDEKST TVAARRVASL MRFREKRKER CFDKKIRYSV 120 RKEVAQKMKR RKGQFAGRAD FGDGSCSSAP CGSTANGEDD HIRESHCQNC GISSRLTPAM 180 RRGPAGPRSL CNACGLMWAN KGTLRSPLNA PKMTVQHPAD LSKTGDTDDS KANLCAEHNQ 240 TTMKTDTEMV PEQEQKADVL PPTKEEDSMA TS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0301600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288076 | 0.0 | AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632019.1 | 1e-177 | GATA transcription factor 19 isoform X1 | ||||
Swissprot | Q0DNU1 | 1e-178 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | I1PF70 | 0.0 | I1PF70_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0301600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 2e-53 | ZIM-LIKE 2 |