PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0296300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 318aa    MW: 35278.9 Da    PI: 6.5922
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0296300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-092262602155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  ORGLA03G0296300.1 226 RWPYPSEMEKIALAESTGLEQKQINNWFINQRKRH 260
                        669*****************************885 PP
2ELK33.31e-11181201222
                ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                        LK++LlrKYsgyLg+L++E+s
  ORGLA03G0296300.1 181 LKRHLLRKYSGYLGGLRKELS 201
                        9******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-468108IPR005540KNOX1
PfamPF037904.5E-97092IPR005540KNOX1
SMARTSM012561.9E-974129IPR005541KNOX2
PfamPF037919.9E-1193127IPR005541KNOX2
PROSITE profilePS5121310.109180200IPR005539ELK domain
SMARTSM011885.4E-6180201IPR005539ELK domain
PfamPF037897.4E-8181201IPR005539ELK domain
PROSITE profilePS5007113.054200263IPR001356Homeobox domain
SuperFamilySSF466898.77E-19201272IPR009057Homeodomain-like
SMARTSM003892.1E-12202267IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-27205266IPR009057Homeodomain-like
CDDcd000861.57E-11212263No hitNo description
PfamPF059203.8E-16220259IPR008422Homeobox KN domain
PROSITE patternPS000270238261IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEELEGHRGA GRLPPSPPLL PFPKVSVQVY TVPSSSTAAS AAAAGGARQV VAPATRDGGG  60
RAAGVLDDPV KARIVSHPRY HRLLAAFLDC HKEDYCKLLV ECKEELSRPL QEAEEFLRTV  120
ESELNSINSG PPLTALISES KAGLDSSDDD EHEDGSGMEM MEAAEDEDLG IIDPRSDDKA  180
LKRHLLRKYS GYLGGLRKEL SKKRKKGKLP KEARQKLLTW WELHYRWPYP SEMEKIALAE  240
STGLEQKQIN NWFINQRKRH WKPTEEMQFA VMEAYHHQST DAAAAFYVDV DARLVGATAA  300
APAAAVYTAR PDHGVWRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195204LRKELSKKRK
2201205KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0296300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0716640.0AB071664.1 Oryza sativa Indica Group mRNA for transcription factor OSH3, complete cds, cultivar:IR24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628822.11e-161homeobox protein knotted-1-like 7
SwissprotQ948L51e-162KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLI1PF170.0I1PF17_ORYGL; Uncharacterized protein
STRINGORGLA03G0296300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-59KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]