PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0296100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 365aa    MW: 40293.3 Da    PI: 6.8958
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0296100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-092883261755
                        HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        el +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  ORGLA03G0296100.1 288 ELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 326
                        5566789*****************************885 PP
2ELK37.16.8e-13246267122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+Ll+KYsgyL+sLkqE+s
  ORGLA03G0296100.1 246 ELKHHLLKKYSGYLSSLKQELS 267
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-22106150IPR005540KNOX1
PfamPF037902.2E-23107148IPR005540KNOX1
SMARTSM012564.3E-28157208IPR005541KNOX2
PfamPF037911.1E-22163206IPR005541KNOX2
SMARTSM011881800166186IPR005539ELK domain
PfamPF037898.3E-10246267IPR005539ELK domain
SMARTSM011884.9E-7246267IPR005539ELK domain
PROSITE profilePS5121311.331246266IPR005539ELK domain
PROSITE profilePS5007112.617266329IPR001356Homeobox domain
SuperFamilySSF466892.87E-19267342IPR009057Homeodomain-like
SMARTSM003898.5E-13268333IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27271330IPR009057Homeodomain-like
CDDcd000861.34E-12278330No hitNo description
PfamPF059203.0E-16286325IPR008422Homeobox KN domain
PROSITE patternPS000270304327IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEEISHHFGV VGASGVHGGH QHQHQHHHHP WGSSLSTIVA PPPPPQPQQQ QTQAGGMAHT  60
PLTLNTAAAA VGNPVLQLAN GSLLDACGKA KEASASASAS YAADVEAIKA KIISHPHYSS  120
LLAAYLDCQK VGAPPEVAAR LTAVAQDLEL RQRTALGGLG AATEPELDQF MEAYHEMLVK  180
YREELTRPLQ EAMEFLRRVE TQLNTLSISG RSLRNILSSG SSEEDQEGSG GETELPEIDA  240
HGVDQELKHH LLKKYSGYLS SLKQELSKKK KKGKLPKDAR QQLLNWWELH YKWPYPSESQ  300
KVALAESTGL DLKQINNWFI NQRKRHWKPS DEMQFVMMDG YHPTNAAAFY MDGHFINDGG  360
LYRLG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates genes involved in development. May be involved in shoot formation during embryogenesis. Overexpression in transgenic plants causes altered leaf morphology (PubMed:10488233, PubMed:8755613, PubMed:9869405). Regulates anther dehiscence via direct repression of the auxin biosynthetic gene YUCCA4 (PubMed:29915329). Binds to the DNA sequence 5'-TGAC-3' in the promoter of the YUCCA4 gene and represses its activity during anther development (PubMed:29915329). Reduction of auxin levels at late stage of anther development, after meiosis of microspore mother cells, is necessary for normal anther dehiscence and seed setting (PubMed:29915329). {ECO:0000269|PubMed:10488233, ECO:0000269|PubMed:29915329, ECO:0000269|PubMed:8755613, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0296100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402060.0FJ940206.1 Oryza sativa Japonica Group clone KCB522D03 homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629392.10.0homeobox protein knotted-1-like 6
SwissprotP466090.0KNOS6_ORYSJ; Homeobox protein knotted-1-like 6
TrEMBLI1PF150.0I1PF15_ORYGL; Uncharacterized protein
STRINGORGLA03G0296100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-99KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Song S, et al.
    OsFTIP7 determines auxin-mediated anther dehiscence in rice.
    Nat Plants, 2018. 4(7): p. 495-504
    [PMID:29915329]