PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0281100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 476aa    MW: 49283.6 Da    PI: 4.7628
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0281100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074247269123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg++F ++  L  H  +H
  ORGLA03G0281100.1 247 FVCSICGRCFGSHQALGGHVLSH 269
                        89***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-7245269No hitNo description
PROSITE profilePS501579.889247274IPR007087Zinc finger, C2H2
PfamPF139121.1E-4247271IPR007087Zinc finger, C2H2
SMARTSM003550.031247269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-7401428No hitNo description
PROSITE profilePS5015710.076406433IPR007087Zinc finger, C2H2
PfamPF139129.8E-7406430IPR007087Zinc finger, C2H2
SMARTSM003550.13406428IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280408428IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAVNSGDRAR ARGHHGDDDE EGVAVVGEDY PYCSDSDSDD DDDVNRYVFL ARQPAPPVDR  60
DDAEADAGAE GTGCCKRKRR VVDDDDDDDG FSPRQPALLD GSGGQAAAEE EDDEGSSDDD  120
DAMAPRGEAG GGGRGRGVGK VSRKKARLVD LIRSPLLPAE LDGSDKAAPP PPRGVCPKKI  180
AVVVQAKNRK RRRFVDGGEE QEPQPQPPVR GKRSRGPDLE ASEGLQTASA AAAAAAAEAA  240
ERASKRFVCS ICGRCFGSHQ ALGGHVLSHK KKAKNAAIAA AARDATTTAV TEAVAPASQR  300
QSFFAADING QDERGCDGAE GSRYDDDEEK SPVVVDDVAA CHDADVDESR GHGKAESASA  360
IDAGGDAGNN KVAHGDGEEN DKIAGVVVAS SHDGDSDVGK MKIVQHKCDE CGKVCLTGQA  420
LGGHMSKHRR TRPAANGGEG PATATVADGG AQTVRLIGDD VCLQRAVAIA GFHSAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0281100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0973680.0AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1PEL50.0I1PEL5_ORYGL; Uncharacterized protein
STRINGORGLA03G0281100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1638077