PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0273900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 676aa    MW: 74413.8 Da    PI: 6.3632
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0273900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.1e-094014381954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  ORGLA03G0273900.1 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438
                        664559******************************88 PP
2BELL120.19.8e-39264335172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  ORGLA03G0273900.1 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335
                        689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-56188333IPR006563POX domain
PfamPF075262.5E-51194331IPR006563POX domain
PROSITE profilePS5007112.357379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-28381451IPR009057Homeodomain-like
SMARTSM003891.6E-9382446IPR001356Homeobox domain
CDDcd000867.16E-13382443No hitNo description
SuperFamilySSF466893.21E-17383448IPR009057Homeodomain-like
PfamPF059201.1E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD  180
NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS  240
KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF  300
DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY  360
IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE  480
DLKSSMSQTY QPSQLGESKA NIGMMSLGGA PAGFHNEGNQ DDSFMNLMLK DQRPGEAEGS  540
LLHDAVAHHS DENARFMAYH LSGLGRYGNG NVSLTLGLQH PDNRLSVQNT HQPGFAGAGE  600
EIYNSTASLG VAAASSSDYE STNQIDQRQR SSCRIEAAVW LPQAQGLGSC IFFCTSKCAL  660
LLSCGPGNYG FSVCSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16388445158Homeobox protein Meis1
4xrs_B1e-16388445158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0273900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679390.0AK067939.1 Oryza sativa Japonica Group cDNA clone:J013124I05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631000.10.0BEL1-like homeodomain protein 7
RefseqXP_025879417.10.0BEL1-like homeodomain protein 7
TrEMBLI1PEE30.0I1PEE3_ORYGL; Uncharacterized protein
STRINGORGLA03G0273900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-110BEL1-like homeodomain 6