PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0273800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 351aa    MW: 37217.3 Da    PI: 5.9068
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0273800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.13.1e-082883202254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        ++yp+ +e+  LA  +gL+ +q+++WF N R +
  ORGLA03G0273800.1 288 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 320
                        89*****************************88 PP
2BELL62.68.8e-211412031072
               BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        akLlsll eV+ r+++y  +l+ v +sFe + g g+ + Yt+l  +a+SrhF +L+ ai  ++
  ORGLA03G0273800.1 141 AKLLSLLSEVQSRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSRHFGSLRRAILRKL 203
                        8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-1781201IPR006563POX domain
PfamPF075265.2E-2287199IPR006563POX domain
PROSITE profilePS5007111.175261324IPR001356Homeobox domain
CDDcd000863.58E-11264325No hitNo description
SMARTSM003895.4E-9264328IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-25269330IPR009057Homeodomain-like
SuperFamilySSF466896.42E-17270332IPR009057Homeodomain-like
PfamPF059205.0E-17281320IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVASKQLHSQ RCGGHYCQLH HHRPEEIAGA GAESHRRDGS SGCGGAGPMV VLTLGSGAAA  60
AEDDGGGRSR CCCGAGGAAP ATMVSALRGS RYLLPAQELL REAVSAAAAS ARGGDDDDEA  120
VASFPHDGKS TGIGGGGGVQ AKLLSLLSEV QSRHEHYFGE LRRVSASFEP ALGAGATAGY  180
TALMAQAMSR HFGSLRRAIL RKLRLHAAAA ARTRSALLRL ARDAMEEDDE GDGEEEEEEE  240
EEEVVNRVVR RTKQAAAARA EQAWRPLRGL PEDAVGVLRA WLFDHFLHPY PNDNEKLMLA  300
VATGLSRTQI SNWFINARVR LWKPMVEEMY NDEFDDDDAG SGGGGGASSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16270328563Homeobox protein Meis2
3k2a_B1e-16270328563Homeobox protein Meis2
4xrm_A1e-16270328563Homeobox protein Meis2
4xrm_B1e-16270328563Homeobox protein Meis2
5bng_A1e-16270328159Homeobox protein Meis2
5bng_B1e-16270328159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0273800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646650.0AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879418.10.0BEL1-like homeodomain protein 11
TrEMBLI1PEE20.0I1PEE2_ORYGL; Uncharacterized protein
STRINGORGLA03G0273800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.16e-35BEL1-like homeodomain 11