PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0258500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 556aa    MW: 60833.6 Da    PI: 7.1707
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0258500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.83.7e-21388442455
            G2-like   4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 
                        lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v gLt +++kSHLQkYR 
  ORGLA03G0258500.1 388 LRWSDDLHKMFVEAVAYHGGPYEAKPTAVketMQAMGVTGLTTHNIKSHLQKYRE 442
                        89************************777222667889****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517354.11E-4175305IPR016040NAD(P)-binding domain
PRINTSPR000817.4E-147592IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7204.3E-4876293IPR016040NAD(P)-binding domain
CDDcd052332.19E-4676320No hitNo description
PfamPF001061.1E-3876288IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610232260IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000817.4E-14245264IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000817.4E-14269286IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466893.58E-12382444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-19384443IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-16388442IPR006447Myb domain, plants
PfamPF002491.1E-5389441IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAATAAYLPL RAQAQVGLAP LRPSGSAAAG ARLPGRTARR RLAARGGPEA AGIRAEAVPG  60
GGGVARRAAM VPPYNVLITG STKGIGYALA KEFLKAGDNV VICSRSAERV ESAVTDLKKE  120
FGEQHVWGIV CDVREGKDVK ALVDFARDKM KYIDIWNHKK AGFSPYLCVP LAQINNAGSN  180
AYSYKPLVET SDEALMEVIT TNTLGLMICC REAINMMRNQ PRGGHIFNID GAGSDGRPTP  240
RFAAYGATKR SVVHLTKSLQ AELQMNEVNN VMVHNLSPGM VTTDLLMSGA TTKQAKFFIN  300
ILAEPANVVA DYLVPNIRAI PTNQSMKPTY IRFLTGLKAY SRIFSRIAFG ARRNKIMSNS  360
QPAQEDDCMS SILVSRLIRA MQPTRSYLRW SDDLHKMFVE AVAYHGGPYE AKPTAVKETM  420
QAMGVTGLTT HNIKSHLQKY RESFSSGVGS LHDHDLLRTT SPSKEALDLA SEMVRDNDAA  480
MAEIEMLNDL LLDHDIEMVE TSFSVDDLQM MERELMSEIK LIEHTFEISE SALDEYMDDL  540
ANYAFDLTGP ANSSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuy_A9e-156328513215Short chain dehydrogenase/reductase
4iuy_B9e-156328513215Short chain dehydrogenase/reductase
4iuy_C9e-156328513215Short chain dehydrogenase/reductase
4iuy_D9e-156328513215Short chain dehydrogenase/reductase
4iuy_E9e-156328513215Short chain dehydrogenase/reductase
4iuy_F9e-156328513215Short chain dehydrogenase/reductase
4iuy_G9e-156328513215Short chain dehydrogenase/reductase
4iuy_H9e-156328513215Short chain dehydrogenase/reductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for chlorophyll b degradation.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0258500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2550260.0AB255026.1 Oryza sativa Japonica Group NOL1 mRNA for short-chain dehydrogenase/reductase NOL1, complete cds.
GenBankAK2878690.0AK287869.1 Oryza sativa Japonica Group cDNA, clone: J065203M24, full insert sequence.
GenBankCT8416590.0CT841659.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628274.10.0chlorophyll(ide) b reductase NOL, chloroplastic isoform X2
SwissprotQ84ST40.0NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLI1PDY90.0I1PDY9_ORYGL; Uncharacterized protein
STRINGORGLA03G0258500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.12e-13G2-like family protein
Publications ? help Back to Top
  1. Kusaba M, et al.
    Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
    Plant Cell, 2007. 19(4): p. 1362-75
    [PMID:17416733]
  2. Sato Y, et al.
    Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
    Plant J., 2009. 57(1): p. 120-31
    [PMID:18778405]