PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0246300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 36041.7 Da PI: 6.7127 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.3 | 3.5e-54 | 5 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...........kvkaeekewyfFskrdkkyatgkrknratks 80 lppGfrFhPtdeelv++yL++kv++ + + ++i++vd++k+ePwdLp k k++ +ekewyfFs rd+ky+tg r+nrat+s ORGLA03G0246300.1 5 LPPGFRFHPTDEELVTYYLARKVSDFGFAT-RAIADVDLNKCEPWDLPsKslanssisipsKASMGEKEWYFFSMRDRKYPTGIRTNRATDS 95 79*************************999.89***************54899999988876667999************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWk+tgkdke+++ +g+l g+kktLvfy+grapkg kt+Wvmheyrl ORGLA03G0246300.1 96 GYWKTTGKDKEIFH-GGALAGMKKTLVFYRGRAPKGAKTSWVMHEYRL 142 **************.*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-62 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.117 | 5 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-29 | 6 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEEGLPPGFR FHPTDEELVT YYLARKVSDF GFATRAIADV DLNKCEPWDL PSKSLANSSI 60 SIPSKASMGE KEWYFFSMRD RKYPTGIRTN RATDSGYWKT TGKDKEIFHG GALAGMKKTL 120 VFYRGRAPKG AKTSWVMHEY RLQSKFPYKP AKDEWVVCRV FKKLQCHLAK PRPPHDDVDG 180 DGASPPEMVD ASSLGELGEL DVSSILLGGF APPSGELCHG GGGGDGFGAH RLDVGAYMSW 240 LQAAAAANQG MFQWPAATQA GLVGGTVFAA AHKATGTMPF GGGCSQQQAR DVGVSLANVG 300 GGDALFGGAP LAKVDMECGE QAPQLDMDDS TWRAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 5 | 163 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 5 | 163 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0246300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629240.1 | 0.0 | NAC domain-containing protein 79 | ||||
TrEMBL | I1PDL7 | 0.0 | I1PDL7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0246300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 6e-89 | NAC domain containing protein 58 |