PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0243700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 204aa MW: 23201.2 Da PI: 9.8792 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.7e-18 | 34 | 116 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + + + +++p +f++++ggk + t++le+++g + v++ + + +++v++ GW+ Fv+a+++k+gD+++F+++++s+f v+++ ORGLA03G0243700.1 34 TTDSMHSMIIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVIQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 116 34455679*******888888..5669***************..**************************************..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-24 | 23 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 26 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.478 | 26 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.55E-19 | 28 | 117 | No hit | No description |
SMART | SM01019 | 1.8E-11 | 29 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-16 | 35 | 116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTTDSMHS MIIPDRFVNH FGGKIPGTIK 60 LESPNGILYV VEVTECMNKT VIQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG 120 CERNMFPXKA TGMEFLMNLR RVRILKALLA LPTFYHGRAR VVYLHCKRRX SKRKYDPSNP 180 KFPFMQQSXT RAILGXLVPL ASXN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 173 | RRXSKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0243700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 1e-130 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689972.1 | 2e-73 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0619800-like | ||||
Swissprot | Q10GP0 | 4e-87 | Y3198_ORYSJ; Putative B3 domain-containing protein Os03g0619850 | ||||
TrEMBL | I1PDJ1 | 1e-146 | I1PDJ1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0243700.1 | 1e-147 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-13 | B3 family protein |