PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0229100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 483aa    MW: 51974.1 Da    PI: 3.9724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0229100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.51.3e-2371451128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..d 89 
                        l pG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+ +    d
  ORGLA03G0229100.1   7 LLPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAEARAKNGKGKRQKRtVEGGGFWQGQRMavD 97 
                        579***************************999**************743.456789*******************555599**96655222 PP

                NAM  90 kevlsk..........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                         e              +  +     ++ k +L f+ ++ ++g ++  vmhey++
  ORGLA03G0229100.1  98 GER--LvvpgddggggG--DegleiTWRKYVLSFF-AEGERG-SSGCVMHEYAV 145
                        222..133456666550..155565899999****.444454.7999*****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-294164IPR003441NAC domain
PROSITE profilePS5100525.7727164IPR003441NAC domain
PfamPF023651.5E-139144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAGADGLLPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG  60
DEAFFFAEAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDDGGG GGDEGLEITW  120
RKYVLSFFAE GERGSSGCVM HEYAVTSPAD LASSQLRLYR VRFSGHGKKR KREPQCLDSH  180
DDDDDGGDQE SATHRRAVAE TTLFDGYVPR PAADGTDQGT YGVIDGESSL ASHCLPDQIV  240
PPAEVDATAG VENPLLDEER WSPPQPALVK QNSYDLMAIS SLLFSDLPDR IDDDDLSVSQ  300
TEGTELSEQG SSGVIGDDYW RATGGAETEK ISLLDEERRP PPQPAPPTAA LVPPLQGQSS  360
YDLMADSSLL FADLPGSIDD DELQRSLRAS DMPDQFLAQT EEAGAGGGGG AAAALNKQSN  420
SSPLGVEVPM ALSDLESPES MPLSDLEFPE SIDEVLSYIA FTTDDTSCLD FDMDELFSDM  480
PAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0229100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLI1PD450.0I1PD45_ORYGL; Uncharacterized protein
STRINGORGLA03G0229100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-13NAC domain containing protein 94