PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0228900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 186aa    MW: 19973.8 Da    PI: 11.286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0228900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.22e-20793187
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87
                       lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+   + +++ +e +fF+ ++ k+ +gkr++r +   g+W+ + 
  ORGLA03G0228900.1  7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTPL-ADHTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWQGQR 93
                       79****************************999************953.33456789*******************555599**9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-233132IPR003441NAC domain
PROSITE profilePS5100519.9757186IPR003441NAC domain
PfamPF023653.5E-118131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTPLADHTRG  60
DEAFFFAGAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDGGGG VDGSGGGGLE  120
ITWRKYVLSF FARVNRAARA GFRSARGSRS VWTPTMMKTA AIKNARLPGA AWLFLQPTAP  180
TRAPMA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0228900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.14e-71NAC domain-containing protein 82
TrEMBLI1PD431e-129I1PD43_ORYGL; Uncharacterized protein
STRINGORGLA03G0228900.11e-130(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.27e-13NAC domain containing protein 41