PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0224700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 521aa MW: 55371.7 Da PI: 4.9905 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 54 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed lv+ v+q+G g+W+++ r+ g+ R++k+c++rw ++l ORGLA03G0224700.1 54 KGPWTTAEDAVLVQHVRQHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 101 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 107 | 150 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++ ORGLA03G0224700.1 107 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 150 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.804 | 49 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-14 | 53 | 103 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.95E-28 | 53 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-14 | 54 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 55 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.59E-11 | 56 | 101 | No hit | No description |
PROSITE profile | PS51294 | 22.55 | 102 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-15 | 106 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 107 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 109 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.81E-11 | 109 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MEEMIKPAPA PASSEKEVVA TAATGERRHE EATAGREEQE EEEEEEEAPV VLKKGPWTTA 60 EDAVLVQHVR QHGEGNWNAV QRMTGLLRCG KSCRLRWTNH LRPNLKKGSF SPDEELLIAQ 120 LHAQLGNKWA RMASHLPGRT DNEIKNYWNT RTKRRQRAGL PVYPPDVQLH LAFAKRCRYD 180 DFSSPLSSPQ QSAGSNVLSM DAADAAGAAS SGYTSARPPP LDLAGQLAMG SRPVQLLAAT 240 PFSAPSSPWG KPFARNAQFF QFPHSSPVSP TTPTGPVQVH PVTPELSLGY GLHAGDRARL 300 PPVSPSPGAR AELPSSQLRP SMAPTTAAAA ATGGLVGGAL QDHPNAASLE AMLQELHDAI 360 KIEPPAPPEN RGTEEEEGGG GGNLRGFLHE QIFDKLMPIK SEDFCIVGLH SVLISLQFPG 420 DGKPEVELKD DIETLFDLII PATFPAAAPE PAAAATAASA APNHSSSVSQ HSSDDQDHSN 480 GADVVLDLPI LTGGGGGSSE QDDWSLDGAA CQWDNISGGI C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-29 | 52 | 155 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0224700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147962 | 0.0 | AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629365.1 | 0.0 | transcription factor MYB65 | ||||
TrEMBL | I1PD01 | 0.0 | I1PD01_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0224700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-66 | myb domain protein 101 |