PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0224700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 521aa    MW: 55371.7 Da    PI: 4.9905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0224700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-1754101148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WTt Ed  lv+ v+q+G g+W+++ r+ g+ R++k+c++rw ++l
  ORGLA03G0224700.1  54 KGPWTTAEDAVLVQHVRQHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 101
                        79******************************99***********996 PP

2Myb_DNA-binding50.93.7e-16107150146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  ORGLA03G0224700.1 107 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 150
                        799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.80449101IPR017930Myb domain
SMARTSM007179.2E-1453103IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-2853148IPR009057Homeodomain-like
PfamPF002494.1E-1454101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2155108IPR009057Homeodomain-like
CDDcd001677.59E-1156101No hitNo description
PROSITE profilePS5129422.55102156IPR017930Myb domain
SMARTSM007178.0E-15106154IPR001005SANT/Myb domain
PfamPF002494.2E-15107150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-24109155IPR009057Homeodomain-like
CDDcd001677.81E-11109150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEEMIKPAPA PASSEKEVVA TAATGERRHE EATAGREEQE EEEEEEEAPV VLKKGPWTTA  60
EDAVLVQHVR QHGEGNWNAV QRMTGLLRCG KSCRLRWTNH LRPNLKKGSF SPDEELLIAQ  120
LHAQLGNKWA RMASHLPGRT DNEIKNYWNT RTKRRQRAGL PVYPPDVQLH LAFAKRCRYD  180
DFSSPLSSPQ QSAGSNVLSM DAADAAGAAS SGYTSARPPP LDLAGQLAMG SRPVQLLAAT  240
PFSAPSSPWG KPFARNAQFF QFPHSSPVSP TTPTGPVQVH PVTPELSLGY GLHAGDRARL  300
PPVSPSPGAR AELPSSQLRP SMAPTTAAAA ATGGLVGGAL QDHPNAASLE AMLQELHDAI  360
KIEPPAPPEN RGTEEEEGGG GGNLRGFLHE QIFDKLMPIK SEDFCIVGLH SVLISLQFPG  420
DGKPEVELKD DIETLFDLII PATFPAAAPE PAAAATAASA APNHSSSVSQ HSSDDQDHSN  480
GADVVLDLPI LTGGGGGSSE QDDWSLDGAA CQWDNISGGI C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-295215525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0224700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479620.0AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629365.10.0transcription factor MYB65
TrEMBLI1PD010.0I1PD01_ORYGL; Uncharacterized protein
STRINGORGLA03G0224700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-66myb domain protein 101