PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0210200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 200aa    MW: 21336.1 Da    PI: 8.8637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0210200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-054870123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ Cgk F+++  L  H  +H
  ORGLA03G0210200.1 48 FRCSVCGKAFPSHQALGGHKASH 70
                       89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-124772IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6584875IPR007087Zinc finger, C2H2
SMARTSM003550.00684870IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.92E-94870No hitNo description
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-9104131No hitNo description
PfamPF139123.2E-11108132IPR007087Zinc finger, C2H2
SMARTSM003550.6109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328109131IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVTNMTHDDY VSLCLMALAQ AGVGGQWPAQ KQQIDMAPPA PERELLRFRC SVCGKAFPSH  60
QALGGHKASH RKPPTAALPM HVIDAPPPPS AEDTASSSTT TTTSGGGRHR CSVCHRTFAT  120
GQALGGHKRC HYWDGLSVVS VTASASGSGS SSVRNFDLNL KPVPDTVAAG VRRWGEEEEV  180
QSPLPFKKRR LSSPSLELNL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0210200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1068870.0AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence.
GenBankAC1478030.0AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence.
GenBankAK1089970.0AK108997.1 Oryza sativa Japonica Group cDNA clone:002-153-G07, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616557.11e-147zinc finger protein 36-like
RefseqXP_015630035.11e-147zinc finger protein 36-like
SwissprotQ75KE59e-55ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A0D3FK731e-146A0A0D3FK73_9ORYZ; Uncharacterized protein
TrEMBLI1PCK61e-146I1PCK6_ORYGL; Uncharacterized protein
STRINGORGLA03G0210200.11e-147(Oryza glaberrima)
STRINGOBART03G22560.11e-147(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-30zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]