PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0204500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 417aa    MW: 44244.8 Da    PI: 6.5605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0204500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001279301123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ Cg+ F +   L  H  +H
  ORGLA03G0204500.1 279 YECHGCGRAFQSYQALGGHRASH 301
                        99********9999888888777 PP
2zf-C2H211.90.00071355377123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C+k F +   L  H r+H
  ORGLA03G0204500.1 355 FVCPICSKEFGSGQALGGHKRSH 377
                        89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.43E-81739No hitNo description
Gene3DG3DSA:3.30.160.602.1E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.4E-51739IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5331740IPR007087Zinc finger, C2H2
SMARTSM003550.161739IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576677.43E-8274301No hitNo description
PfamPF139124.0E-10278303IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388279306IPR007087Zinc finger, C2H2
SMARTSM003550.52279301IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18355378IPR007087Zinc finger, C2H2
PfamPF139128.0E-12355378IPR007087Zinc finger, C2H2
SMARTSM003550.048355377IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280357377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LMEVDAVAAA VAPAYERADD  60
DEGGDGKTVR RWMQSGGGYG LRENPKKTRR LSAGSGGGGG GGDNDDGDAC HHPGGDLLSS  120
SSCRPVLGRV RSHAPPAGGA AYADDSEDVG VDVDGGGGDD RDRDREMLVM AAPRRRPRSM  180
RVPAPVRDEF VVDEEPEDVA LCLVMLSRDT GRPWNSRPSD EYSSLMYNSS YHRHHDAVSD  240
DDLELSLSSP YADTEIRTKK RRKTTGAAST AGGEKRGRYE CHGCGRAFQS YQALGGHRAS  300
HKRINSNCSL VKPPADQPEP SIETSFSSAS TSVSPADTMI SAATISKTVK KATKFVCPIC  360
SKEFGSGQAL GGHKRSHSIA GELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178PRRRPRS
2258262KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0204500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379990.0AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence.
GenBankAK1055830.0AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630118.10.0uncharacterized protein LOC4333158
TrEMBLA0A0D3FK150.0A0A0D3FK15_9ORYZ; Uncharacterized protein
TrEMBLI1PCE90.0I1PCE9_ORYGL; Uncharacterized protein
STRINGORGLA03G0204500.10.0(Oryza glaberrima)
STRINGOBART03G22030.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-20C2H2-like zinc finger protein