PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0204400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 520aa MW: 57651.9 Da PI: 4.3389

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0204400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	336	384	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +rWT eE+ l++++v ++ W+ +r ++ g+t +++s+++++ ORGLA03G0204400.1 336 QRWTDEEESLFYRVVYSNPPSlgknFWHFLPRALP-GKTSMELVSYYFNV 384 79************988668888******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0055	334	387	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.3E-5	336	385	IPR009057	Homeodomain-like
CDD	cd00167	3.08E-6	337	385	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MVFSHNKNSN QFDPLSYVNL SGLDADSQSV SFTDMNSRDA PSNSHVTDVG KENMLNNPEE 60 SKIASTGLKP GSPISPENFS FSSLPGSSCH LSTLDHGKRP LSDVRPFQVA CKRPKQIDEN 120 TWSTSTFETS FSDLADETRE PDYIYHNSGI SACNTSSSIP YSNLEQLIGE ENLYLPDWVT 180 TFPGYSGDFW PAPVADQVDD IDSPIHDHLP RKAVAIGPDH QADIPEWRPR ILMTVPYGSG 240 SCADLSYSSV STSGSAPRDE DSESDKWIKH CVIEMPSSCS VAWVGDHGRD CGCSDEGSIR 300 CVRRHVLESR ENLKRIFGED KFRELGLCEM GEDIAQRWTD EEESLFYRVV YSNPPSLGKN 360 FWHFLPRALP GKTSMELVSY YFNVFMLRKR AQQNRSEPLH VDSDDDEVPD EPSVTEDEDS 420 AVESPAHDYY VNNPMSPESE DSFHEKVADS LSGLRDGPSQ KPLGSNTDNP GGDADVQDES 480 CTSFEDHNGA HGSNGVQCAE FHMMLPNAAL DHYSDRGACM

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MVFSHNKNSN QFDPLSYVNL SGLDADSQSV SFTDMNSRDA PSNSHVTDVG KENMLNNPEE  60
SKIASTGLKP GSPISPENFS FSSLPGSSCH LSTLDHGKRP LSDVRPFQVA CKRPKQIDEN  120
TWSTSTFETS FSDLADETRE PDYIYHNSGI SACNTSSSIP YSNLEQLIGE ENLYLPDWVT  180
TFPGYSGDFW PAPVADQVDD IDSPIHDHLP RKAVAIGPDH QADIPEWRPR ILMTVPYGSG  240
SCADLSYSSV STSGSAPRDE DSESDKWIKH CVIEMPSSCS VAWVGDHGRD CGCSDEGSIR  300
CVRRHVLESR ENLKRIFGED KFRELGLCEM GEDIAQRWTD EEESLFYRVV YSNPPSLGKN  360
FWHFLPRALP GKTSMELVSY YFNVFMLRKR AQQNRSEPLH VDSDDDEVPD EPSVTEDEDS  420
AVESPAHDYY VNNPMSPESE DSFHEKVADS LSGLRDGPSQ KPLGSNTDNP GGDADVQDES  480
CTSFEDHNGA HGSNGVQCAE FHMMLPNAAL DHYSDRGACM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0204400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831188	0.0	CT831188.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA130N12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631894.1	0.0	uncharacterized protein LOC4333157
Refseq	XP_015631895.1	0.0	uncharacterized protein LOC4333157
TrEMBL	I1PCE8	0.0	I1PCE8_ORYGL; Uncharacterized protein
STRING	ORGLA03G0204400.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14431	6	6