PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0196700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 23262 Da PI: 5.5606 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lv +++++G g W + +++ g++R++k+c++rw++yl ORGLA03G0196700.1 14 RGAWTAMEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ ORGLA03G0196700.1 67 RGNISGDEEELILRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 6777889***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.922 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.59E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-23 | 65 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.538 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.32E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGRKPCCSKE GLNRGAWTAM EDDILVSYIA KHGEGKWGAL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SGDEEELILR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSKRGFLIS 120 PWRGGGHDDG NAAAGAVPNL PMPIGYELGG AGGGGEAGAV DLEALLGQLE AEEDDDGDHH 180 HHHHQQQQQE EEVPSSLGDE DDDYLELAPW LL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 115 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0196700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | D88619 | 0.0 | D88619.1 Oryza sativa mRNA for OSMYB3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629423.1 | 4e-77 | anthocyanin regulatory C1 protein | ||||
Swissprot | P10290 | 1e-60 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | I1PC71 | 1e-151 | I1PC71_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0196700.1 | 1e-152 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-59 | MYB family protein |