PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0137600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 49497.7 Da PI: 8.7616 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.8 | 3.6e-13 | 383 | 406 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + r G C+yG+rC+FaHg ORGLA03G0137600.1 383 KTELCNKWER-GACPYGARCRFAHG 406 8*********.*************9 PP | |||||||
2 | zf-CCCH | 18.4 | 3.7e-06 | 419 | 445 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p ORGLA03G0137600.1 419 YKTLPCQMFAAASGCPYGHRCHFRHSP 445 9***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-16 | 377 | 413 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.079 | 381 | 408 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 381 | 412 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-8 | 381 | 407 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 383 | 406 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-10 | 414 | 445 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-7 | 415 | 444 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.746 | 418 | 446 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 418 | 445 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
SLGSRVARAR RWRGSSASSR RRGRPASPST AAVLDPRRGC RRWRRCSARL HRASPMAAEV 60 VVVATTHRAR ASSPLQKQIP DCRDAGDFSS LTWASTLEKP LESPSSCISD GRGGGFGSPT 120 SAFPPEKLLI SPPTCVSDNR GVGNGGGFPF LPWASSLERL LTSPSSCVSD SRGVGNADGF 180 PSLPWASSLE KPLTSPSSCV SDGRSGGYSS PLGASAERER EVREAEMLLR AIAERYDDCF 240 LRLRDAAAEL SDLHRERLRL AAENLHLSLL LEELESEQRK QASAMAPPKL EEDEAAQGGA 300 PKSISIRSPG YLSQKQPQGQ ARPQRLRVRA SQAMEISHPN CLIFVMGNQC SPKEAAAAGD 360 EEDEEDKGGG EVEVEAYRQG AAKTELCNKW ERGACPYGAR CRFAHGLQEL RPVIRHPRYK 420 TLPCQMFAAA SGCPYGHRCH FRHSPLRAAA AESFCY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m9o_A | 1e-17 | 383 | 445 | 11 | 74 | Tristetraproline |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0137600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880078.1 | 0.0 | putative zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q10MN8 | 0.0 | C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | I1PAI0 | 0.0 | I1PAI0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0137600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12143 | 32 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 4e-32 | C3H family protein |