PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0119600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 404aa MW: 40921.2 Da PI: 9.6676

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0119600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	87	146	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+s ORGLA03G0119600.1 87 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKRS 146 67899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-36	71	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.6E-33	90	145	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.758	91	145	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	93	129	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLPVGP TAAAAAPGEI GGLPTSSSSA 60 SAAAAAAQQA RPNSMAERAR LARAPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKT 120 CRRYWTRGGS LRNVPVGGGC RRNKRSGKSS SAAAAGASSS SSKPSSSAAR QLPGGGASPM 180 PSAAASTQPG GAAAGAIIPP SGLSSMSHHL PFLGAMHPPG PNLGLTFSAG FQPLGGMHHH 240 VDTADQFPVA SGGGATIGAS LEQWRVQQQQ QQQQPQQHQF PFLGGALELP PPPPMYQLGL 300 EATRAAGTGA TAAAAFTLGQ TSATATTSRQ EGSMKLEDSK GLEMSLQRQY MAALRQGDGV 360 WGNNNGGNGG SDGGGNGGGG SWTMNFPGFH SSSGGGGDDG GGVL

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLPVGP TAAAAAPGEI GGLPTSSSSA  60
SAAAAAAQQA RPNSMAERAR LARAPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKT  120
CRRYWTRGGS LRNVPVGGGC RRNKRSGKSS SAAAAGASSS SSKPSSSAAR QLPGGGASPM  180
PSAAASTQPG GAAAGAIIPP SGLSSMSHHL PFLGAMHPPG PNLGLTFSAG FQPLGGMHHH  240
VDTADQFPVA SGGGATIGAS LEQWRVQQQQ QQQQPQQHQF PFLGGALELP PPPPMYQLGL  300
EATRAAGTGA TAAAAFTLGQ TSATATTSRQ EGSMKLEDSK GLEMSLQRQY MAALRQGDGV  360
WGNNNGGNGG SDGGGNGGGG SWTMNFPGFH SSSGGGGDDG GGVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0119600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210476	0.0	AC210476.2 Oryza glaberrima clone OG_BBa0060N11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629100.1	0.0	dof zinc finger protein DOF3.6 isoform X1
TrEMBL	I1PA00	0.0	I1PA00_ORYGL; Uncharacterized protein
STRING	ORGLA03G0119600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	3e-42	OBF-binding protein 3