PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0112000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 474aa    MW: 50935.1 Da    PI: 10.0923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0112000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001229252123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C+ Cg++ s + +L+ H+ + H
  ORGLA03G0112000.1 229 FPCKVCGEVLSKPQQLELHQAMkH 252
                        89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037229257IPR007087Zinc finger, C2H2
PROSITE patternPS000280231252IPR007087Zinc finger, C2H2
SuperFamilySSF563993.45E-11254473No hitNo description
Gene3DG3DSA:3.90.228.101.5E-7256473IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAGGGRCSSL LRGFVSLFFL LFIHIGHAGC CFSTGSSTQT LEEDDTGHGA DGRGGGGGGS  60
KRRKISPLAF SPSVSSSTGA DERSRGRRRQ VSSLATSVRF YLHRIFSYSS GSQERRWRFS  120
RGGGRRGGDN DRVVPARAVA VVPGFTPRPR PSGWLPRRSP PGPLGPRPCC SGGLSRPLSA  180
WESPFLSPSS PQSFSITPAV PLSPHNRQIP QATTRQSSSG SFAARGDVFP CKVCGEVLSK  240
PQQLELHQAM KHSLSELSSL DSSMNIIRMI FLAGWKPAVM PGAGEPPSVR RILRIHHNPR  300
VLIRFEEYRD LVRARAARRC AGAGAAAVEE RCVADGNERL RFYCSTMLCT LGAGVCGSPY  360
CCTCSILRHG FAGKQADVDG IATYSSGRAA HASLPDDVER EFAFLQVRRA MLVCRVVAGR  420
VGRGAADDKV AYDSMVPLLP TSSFAAATRG DDDVELLVFN PRAVLPCFVI IYSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0112000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352050.0AC135205.4 Oryza sativa Japonica Group chromosome 3 clone OJ1012B02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629299.10.0uncharacterized protein LOC4332342
TrEMBLI1P9S40.0I1P9S4_ORYGL; Uncharacterized protein
STRINGORGLA03G0112000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-50C2H2 family protein